Table 5

Results of the analysis of adaptive sequence evolution for individual branches of the clade 1 protist-type lysozyme tree.

Branch

Free-ratio

2-ratio


dN/dS

Bootstrap

dN/dS

L

P


A

0.050

92

0.044

1.965

0.1610

B

0.063

100

0.058

1.849

0.1739

C

0.053

100

0.043

4.309

0.0379

D

0.128

49

0.035

1.477

0.2242

E

0.089

100

0.143

0.203

0.6522

F

0.012

100

0.008

10.130

0.0015**,##

G

0.023

100

0.017

8.769

0.0031*,##

H

24.042

58

0.365

1.228

0.2678

I

1.065

62

> 999

8.981

0.0027*,##

J

0.132

100

0.182

1.614

0.2040

K

0.086

100

0.088

0.226

0.6345

L

0.099

100

0.098

0.025

0.8754

M

0.384

76

0.983

4.410

0.0357

N

0.312

85

> 999

8.148

0.0043*,##

O

0.555

66

> 999

8.984

0.0027*,##

P

0.116

100

0.096

0.066

0.7974

Q

0.028

100

0.028

3.446

0.0634

R

0.221

100

0.205

3.798

0.0513

S

0.100

86

0.059

0.384

0.5353

T

< 0.001

93

< 0.001

4.235

0.0396

U

0.109

97

0.104

0.001

0.9703

V

0.158

100

0.168

0.557

0.4557

W

0.047

100

0.034

4.648

0.0311

X

0.892

59

2.616

8.715

0.0032*,##

Y

0.351

93

0.482

3.526

0.0604


Branch names as in Fig. 7B. Methods and abbreviations as in Table 3. The optimal free-ratio model had a likelihood of ln L = -6048.14 and the 1-ratio null model for the LRT comparison had ln L = -6117.89.

Schulenburg and Boehnisch BMC Evolutionary Biology 2008 8:114   doi:10.1186/1471-2148-8-114

Open Data