BMC Evolutionary Biology

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This article is part of the supplement: First International Conference on Phylogenomics

Open Access

SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics

Béatrice Roure, Naiara Rodriguez-Ezpeleta and Hervé Philippe*

BMC Evolutionary Biology 2007, 7(Suppl 1):S2 doi:10.1186/1471-2148-7-S1-S2

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Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support

Yu Liu, Emma T Steenkamp, Henner Brinkmann, Lise Forget, Hervé Philippe, B Franz Lang BMC Evolutionary Biology 2009, 9:272 (25 November 2009)

Software   Open Access

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

Surendra Kumar, Åsmund Skjæveland, Russell JS Orr, Pål Enger, Torgeir Ruden, Bjørn-Helge Mevik, Fabien Burki, Andreas Botnen, Kamran Shalchian-Tabrizi BMC Bioinformatics 2009, 10:357 (28 October 2009)

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PhyloExplorer: a web server to validate, explore and query phylogenetic trees

Vincent Ranwez, Nicolas Clairon, Frédéric Delsuc, Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry BMC Evolutionary Biology 2009, 9:108 (18 May 2009)

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Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

Stephen A Smith, Jeremy M Beaulieu, Michael J Donoghue BMC Evolutionary Biology 2009, 9:37 (11 February 2009)

Reconstruction of extremely large phylogenetic trees is now boosted by a 'megaphylogeny' approach that combines database sequences with taxonomic hierarchy to yield a dense phylogeny including more than 13,000 species of green plants.

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Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Bastien Boussau, Laurent Guéguen, Manolo Gouy BMC Evolutionary Biology 2008, 8:272 (3 October 2008)