Table 8

Predictions of RNA secondary structures by RNAZ (p-value > 90%)

Distal

10 kb

1 kb

exon

intron

Found in human AND chimp (1436)

Distal

418 (29.1%)

64(4.5%)

17(1.2%)

62(4.3%)

184 (12.8%)

10 kb

70 (4.9%)

19(1.3%)

3(0.2%)

19(1.3%)

24(1.7%)

1 kb

30 (2.1%)

8(0.6%)

4(0.3%)

3(0.2%)

1(0.1%)

exon

164 (11.4%)

61(4.2%)

15(1.0%)

6(0.4%)

6(0.4%)

intron

226(15.7%)

20(1.4%)

3(0.2%)

5(0.3%)

4(0.3%)

Distal

10 kb

1 kb

Exon

Intron

Found in human AND mouse (241)

Distal

32(13.3%)

2(0.8%)

2(0.8%)

39(16.2%)

11(4.6%)

10 kb

4(1.7%)

0(0.0%)

0(0.0%)

15(6.2%)

0(0.0%)

1 kb

2(0.8%)

1(0.4%)

1(0.4%)

2(0.8%)

0(0.0%)

exon

71(29.5%)

32(13.3%)

5(2.1%)

2(0.8%)

3(1.2%)

intron

9(3.7%)

3(1.2%)

1(0.4%)

3(1.2%)

1(0.4%)

Distal

10 kb

1 kb

Exon

Intron

Found in human AND chimp AND rodents (234)

Distal

31(13.2%)

2(0.9%)

2(0.9%)

38(16.2%)

10(4.3%)

10 kb

4(1.7%)

0(0.0%)

0(0.0%)

14(6.0%)

0(0.0%)

1 kb

2(0.9%)

1(0.4%)

1(0.4%)

1(0.4%)

0(0.0%)

exon

70(29.9%)

32(13.7%)

5(2.1%)

2(0.9%)

3(1.3%)

intron

9(3.8%)

2(0.9%)

1(0.4%)

3(1.3%)

1(0.4%)

Distal

10 kb

1 kb

exon

Intron

Found in human AND in chimp NOT in rodents (1202)

Distal

387(32.2%)

62(5.2%)

15(1.2%)

24(2.0%)

174 (14.5%)

10 kb

66(5.5%)

19(1.6%)

3(0.2%)

5(0.4%)

24(2.0%)

1 kb

28(2.3%)

7(0.6%)

3(0.2%)

2(0.2%)

1(0.1%)

exon

94(7.8%)

29(2.4%)

10(0.8%)

4(0.3%)

3(0.2%)

intron

217(18.1%)

18(1.5%)

2(0.2%)

2(0.2%)

3(0.2%)

Distal

10 kb

1 kb

exon

Intron

Found in human AND in chimp NOT in rodents, and NOT present in databases (1073)

Distal

353(33.1%)

56(5.2%)

13(1.2%)

22(2.1%)

151 (14.1%)

10 kb

57(5.3%)

15(1.4%)

2(0.2%)

5(0.5%)

20(1.9%)

1 kb

24(2.2%)

7(0.7%)

3(0.3%)

1(0.1%)

1(0.1%)

exon

83(7.7%)

24(2.2%)

9(0.8%)

2(0.2%)

3(0.3%)

intron

196 (18.3%)

17(1.6%)

2(0.2%)

2(0.2%)

3(0.3%)

Zhang et al. BMC Evolutionary Biology 2007 7(Suppl 1):S14   doi:10.1186/1471-2148-7-S1-S14