Table 1 |
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|
Distribution of transcriptionally active regions (TARs), categorized by their distances from the nearest gene annotations |
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|
Annotation on the opposite strand |
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|
|
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|
Distal |
10 kb |
1 kb |
exon |
intron |
Total |
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|
|
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|
Annotation on the same strand as TAR4 |
1 Distal |
3,695 (21.5%) |
537 (3.1%) |
149 (0.9%) |
861 (5.0%) |
1,414 (8.2%) |
6,656 (38.7%) |
|
210 kb |
799 (4.6%) |
224 (1.3%) |
59 (0.3%) |
265 (1.5%) |
146 (0.8%) |
1,493 (8.7%) |
|
|
31 kb |
347 (2.0%) |
92 (0.5%) |
32 (0.2%) |
52 (0.3%) |
20 (0.1%) |
543 (3.2%) |
|
|
exon |
4,637 (27.0%) |
1,454 (8.4%) |
345 (2.0%) |
120 (0.7%) |
172 (1.0%) |
6,728 (39.1%) |
|
|
intron |
1,554 (9.0%) |
137 (0.8%) |
24 (0.1%) |
35 (0.2%) |
28 (0.2%) |
1,778 (10.3%) |
|
|
Total: |
11,032 (64.1%) |
2,444 (14.2%) |
609 (3.5%) |
1,333 (7.8%) |
1,780 (10.4%) |
17,198 |
|
|
|
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|
1Distal: distance from nearest annotated exon > 10 kb 210 kb: distance from nearest annotated exon is less than 10 kb but longer than 1 kb 31 kb: distance from nearest annotated exon is less than 1 kb but do not overlap with exons 4 Genome annotation was based on NCBI assembly 34 downloaded from Ensembl. |
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|
Zhang et al. BMC Evolutionary Biology 2007 7(Suppl 1):S14 doi:10.1186/1471-2148-7-S1-S14 |
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