Additional File 3.

Nucleotide phylogeny of tyrp1 genes in vertebrates. Maximum-likelihood phylogeny of tyrp1 genes based on a 1681 nucleotide alignment (GTR+I+G model; parameter values estimated from the dataset). The tree is rooted with human TYR and TYRP1 genes. Numbers at the branches denote bootstrap values (maximum likelihood/neighbor joining) above 50%. The topology of the tree is consistent with the duplication of tyrp1 during the FSGD.

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Braasch et al. BMC Evolutionary Biology 2007 7:74   doi:10.1186/1471-2148-7-74