Table 1

Species and Genbank accession numbers [46] of opsin nucleotide sequences and deduced amino acids used in phylogenetic analyses.

Opsin

Common name reference in Fig. 3

Species

Genbank accession number


Invertebrate Rh4

Fruit Fly

Drosophila melanogaster

NM_057353

Rh1

Common frog

Rana temporaria

U59920

Salamander

Ambystoma tigrinum

U36574

Lungfish

Neoceratodus forsteri

EF526295

Coelacanth

Latimeria chalumnae

AF131253

Cavefish

Astyanax fasciatus

U12328

Goldfish

Carassius auratus

L11863

Rh2

Green anole

Anolis carolinensis

AF134189

Italian wall lizard

Podarcis sicula

AY941829

Lungfish

Neoceratodus forsteri

EF526296

Coelacanth

Latimeria chalumnae

AF131258

Cavefish

Astyanax fasciatus

AH004622

Goldfish

Carassius auratus

L11865

SWS2

Salamander

Ambystoma tigrinum

AF038946

Bullfrog

Rana catesbiana

AB010085

Lungfish

Neoceratodus forsteri

EF526299

Goldfish

Carassius auratus

L11864

Cavefish

Astyanax fasciatus

AH007939

SWS1

Green anole

Anolis carolinensis

AF134192

Salamander

Ambystoma tigrinum

AF038948

Lungfish

Neoceratodus forsteri

EF526298

Goldfish

Carassius auratus

D85863

Bluefin killifish

Lucania goodei

AY296735

LWS

African clawed frog

Xenopus laevis

U90895

Salamander

Ambystoma tigrinum

AF038947

Lungfish

Neoceratodus forsteri

EF526297

Goldfish

Carassius auratus

L11867

Zebrafish

Danio rerio

NM_001002443

Lamprey

Geotria australis

AY366491


Bailes et al. BMC Evolutionary Biology 2007 7:200   doi:10.1186/1471-2148-7-200

Open Data