  Research articleVisualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effectsJohann Wolfgang Wägele1* 1 Zoologisches Forschungsmuseum Alexander Koenig, 53113 Bonn, Germany 2 Lehrstuhl Spezielle Zoologie, Faculty of Biology, University Bochum, 44780 Bochum, Germany
BMC Evolutionary Biology 2007, 7:147doi:10.1186/1471-2148-7-147
Additional filesAdditional file 1: SAMS nexus block example (1). Example for SAMS commands in nexus format: Reading a data file. Excluding character positions or taxa from the analysis. Analysing base frequencies. Exporting the data set to different file formats. Format: NEX Size: 3KB Download file Additional file 2: SAMS nexus block example (2). Example for SAMS commands in nexus format: Reading a data file. Exluding character positions or taxa from the analysis. Computing split supporting positions. Format: NEX Size: 8KB Download file Additional file 3: Alignment example in nexus format. Data set from Remerie et al 2004: Phylogenetic relationships within the Mysidae (Crustacea, Peracarida, Mysida) based on nuclear 18S ribosomal RNA sequences, Mol. Phyl. Evol., 32(3), pp 770–777. Format: NEX Size: 63KB Download file Additional file 4: SAMS manual. Manual with description of functions and commands of the software SAMS Format: PDF Size: 158KB Download file This file can be viewed with: Adobe Acrobat Reader Additional file 5: SAMS. Executable file for the software SAMS Format: EXE Size: 1.3MB Download file |
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