BMC Evolutionary Biology

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Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects

Johann W Wägele* and Christoph Mayer

BMC Evolutionary Biology 2007, 7:147 doi:10.1186/1471-2148-7-147

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Research article   Open Access

Detecting the symplesiomorphy trap: a multigene phylogenetic analysis of terebelliform annelids

Min Zhong, Benjamin Hansen, Maximilian Nesnidal, Anja Golombek, Kenneth M Halanych, Torsten H Struck BMC Evolutionary Biology 2011, 11:369 (20 December 2011)

Methodology   Open Access

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

Patrick Kück, Karen Meusemann, Johannes Dambach, Birthe Thormann, Björn M von Reumont, Johann W Wägele, Bernhard Misof Frontiers in Zoology 2010, 7:10 (31 March 2010)

Research   Open Access

Phylogenetic support values are not necessarily informative: the case of the Serialia hypothesis (a mollusk phylogeny)

J Wolfgang Wägele, Harald Letsch, Annette Klussmann-Kolb, Christoph Mayer, Bernhard Misof, Heike Wägele Frontiers in Zoology 2009, 6:12 (26 June 2009)

Research article   Open Access Highly Accessed

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

Björn M von Reumont, Karen Meusemann, Nikolaus U Szucsich, Emiliano Dell'Ampio, Vivek Gowri-Shankar, Daniela Bartel, Sabrina Simon, Harald O Letsch, Roman R Stocsits, Yun-xia Luan, Johann Wägele, Günther Pass, Heike Hadrys, Bernhard Misof BMC Evolutionary Biology 2009, 9:119 (27 May 2009)

Research article   Open Access

Unraveling the evolutionary history of the phosphoryl-transfer chain of the phosphoenolpyruvate:phosphotransferase system through phylogenetic analyses and genome context

Iñaki Comas, Fernando González-Candelas, Manuel Zúñiga BMC Evolutionary Biology 2008, 8:147 (16 May 2008)