Table 5

Amino Acid Frequency Simulations. Results of the simulated datasets where the original amino acid frequencies are randomly perturbed by up to 10% from the original values and the alignment length is 500 characters. Each entry indicates the number of times out of 100 replicates the correct model was selected by each measure.

Model

AIC1

AIC2

BIC

Model

AIC1

AIC2

BIC


Blosum+F

94

100

100

JTT+F

93

100

100

Blosum+I+F

71

91

95

JTT+I+F

67

89

94

Blosum+G+F

86

93

96

JTT+G+F

75

89

92

Blosum+I+G+F

99

97

96

JTT+I+G+F

98

96

96

CPREV+F

92

100

100

MtREV+F

93

99

99

CPREV+I+F

87

98

99

MtREV+I+F

86

96

99

CPREV+G+F

93

96

97

MtREV+G+F

86

93

95

CPREV+I+G+F

89

87

84

MtREV+I+G+F

85

82

80

Dayhoff+F

93

99

99

WAG+F

95

100

100

Dayhoff+I+F

91

98

99

WAG+I+F

82

96

97

Dayhoff+G+F

86

93

96

WAG+G+F

88

95

96

Dayhoff+I+G+F

99

97

96

WAG+I+G+F

90

89

89


Keane et al. BMC Evolutionary Biology 2006 6:29   doi:10.1186/1471-2148-6-29

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