Table 2

Full ML Comparison. A comparison of the models selected from the likelihood values obtained from a full ML tree search using all models and the likelihood values using the default NJ-JTT base tree. The column 'Identical' indicates the number of times (out of 100 alignments) both procedures selected the same model. The column titled 'Rate' indicates cases when the same amino acid matrix and a different ASRV was selected. The column titled 'Matrix' indicates cases when the a different amino acid matrix was selected.

AIC1

AIC2

BIC


Dataset

Identical

Rate

Matrix

Identical

Rate

Matrix

Identical

Rate

Matrix


Proteobacteria

95

4

1

93

6

1

94

2

4

Archaea

99

1

0

96

2

2

95

2

3

Vertebrate

91

7

2

94

5

1

97

1

2


Keane et al. BMC Evolutionary Biology 2006 6:29   doi:10.1186/1471-2148-6-29

Open Data