Research article
Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes
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* Corresponding author: Jan O Andersson jan.andersson@icm.uu.se
1 Institute of Cell and Molecular Biology, Uppsala University, Biomedical Center, Box 596, S-751 24 Uppsala, Sweden
2 School of Biology, The Devonshire Building, The University of Newcastle upon Tyne, NE1 7RU, UK
3 Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK
4 The Canadian Institute for Advanced Research, Program in Evolutionary Biology, Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 1X5, Canada
BMC Evolutionary Biology 2006, 6:27 doi:10.1186/1471-2148-6-27
Published: 21 March 2006Additional files
Additional File 1:
Lists accession numbers, keys to short names used in alignment files, taxonomic descriptions, and the basis for exclusion from the phylogenetic analyses for all datasets used in the study.
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Additional File 2:
Information about the datasets and parameters of the phylogenetic analyses.
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Additional File 3:
Figures showing the split support for the two runs in the grouped aa analyses plotted one against the other as indicators of convergence.
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Additional File 4:
Figure showing the structural organization of the T. vaginalis A-type flavoproteins together with additional discussion.
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Additional File 5:
Figure showing a phylogenetic analysis of the short version of glucosamine-6-phosphate isomerase with the long version and some prokaryotic long branches excluded.
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Additional File 6:
Alignment file in nexus format for the hybrid-cluster protein.
Format: ANDE Size: 70KB Download file
Additional File 7:
Alignment file in nexus format for the A-type flavoprotein.
Format: ANDE Size: 161KB Download file
Additional File 8:
Alignment file in nexus format for the glucosamine-6-phosphate isomerase.
Format: ANDE Size: 165KB Download file
Additional File 9:
Alignment file in nexus format for the alcohol dehydrogenase E.
Format: ANDE Size: 85KB Download file