Phylogenetic identification of lateral genetic transfer events
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* Corresponding author: Robert G Beiko r.beiko@imb.uq.edu.au
BMC Evolutionary Biology 2006, 6:15 doi:10.1186/1471-2148-6-15
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BioMed Central: 10 citations
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Research article
Elizabeth Skippington, Mark A Ragan BMC Genomics 2011, 12:532 (29 October 2011) |
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Research
Telling the whole story in a 10,000-genome world Robert G Beiko Biology Direct 2011, 6:34 (30 June 2011) This article is part of a collection on Beyond the tree of life |
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A new, fast algorithm for detecting protein coevolution using maximum compatible cliques Alex Rodionov, Alexandr Bezginov, Jonathan Rose, Elisabeth RM Tillier Algorithms for Molecular Biology 2011, 6:17 (14 June 2011) |
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Methodology article
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests Sophie S Abby, Eric Tannier, Manolo Gouy, Vincent Daubin BMC Bioinformatics 2010, 11:324 (15 June 2010) |
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Software
SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees Tobias Hill, Karl JV Nordström, Mikael Thollesson, Tommy M Säfström, Andreas KE Vernersson, Robert Fredriksson, Helgi B Schiöth BMC Evolutionary Biology 2010, 10:42 (13 February 2010) |
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Review
Prokaryotic evolution and the tree of life are two different things Eric Bapteste, Maureen A O'Malley, Robert G Beiko, Marc Ereshefsky, J Peter Gogarten, Laura Franklin-Hall, François-Joseph Lapointe, John Dupré, Tal Dagan, Yan Boucher, William Martin Biology Direct 2009, 4:34 (29 September 2009) This article is part of a collection on Evolutionary Biology 150... From philosophical, scientific and epistemological perspectives, we argue that the tree of life can not successfully account for prokaryotic evolution, and we briefly set out alternative models to study their evolution.
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Proceedings
Databases of homologous gene families for comparative genomics Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière BMC Bioinformatics 2009, 10(Suppl 6):S3 (16 June 2009) |
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Research article
Philippe Lemey, Martin Lott, Darren P Martin, Vincent Moulton BMC Bioinformatics 2009, 10:126 (27 April 2009) |
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Software
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships Cuong Than, Derek Ruths, Luay Nakhleh BMC Bioinformatics 2008, 9:322 (28 July 2008) |
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Research article
The power of phylogenetic approaches to detect horizontally transferred genes Maria S Poptsova, J Peter Gogarten BMC Evolutionary Biology 2007, 7:45 (21 March 2007) |