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Resolution: standard / high Figure 7.
Unrooted strict consensus tree of 3 equally parsimonious gene trees (1000 random sequence
additions with TBR). Bootstrap proportions (500 bootstrap replicates, 10 random sequence additions each)
for each hypothesized receptor group are indicated above or below the branch leading
to the group. Bootstrap proportions for hypothesized receptor groups are provided
only if greater than 50%. The 68% bootstrap proportion indicated by dashed lines corresponds
to the entire group of vertebrate GnRHRs, a group not represented in the strict consensus
tree. Class A GCPRs are shaded in blue, class B GPCRs are shaded in green, nematode
orthologues are shaded in orange, vertebrate receptor sequence labels are black and
invertebrate receptor sequence labels are white. Tree is derived from a 422 amino
acid alignment of Class A and B GPCRs (See 4: GPCRs_alignment.pdf). GPCR abbreviations: akhr Adipokinetic hormone receptor; caccr Cardioacceleratory peptide receptor; calcr Calcitonin receptor; ccapr Crustacean cardioactive peptide receptor; corr Corazonin receptor; ghrhr Growth hormone releasing hormone receptor; gnrhr Gonadotropin releasing hormone receptor (types 1, 2, and 3); ortho1 AKHR/GnRHR orthologue 1; ortho2 AKHR/GnRHR orthologue 2; oxyr Oxytocin receptor; rhodlk Rhodopsin-like; rhod Rhodopsin; sctr Secretin receptor; vasr Vasopressin receptor (types 1A and 2). Organism abbreviations: Af Astyanax fasciatus (teleost fish); Ag Anopheles gambiae (mosquito); Am Apis mellifera (bee); Ami Alligator mississippiensis (alligator); Bm Bombyx mori (moth); Bt Bos Taurus (cattle); Ca Camponotus abdominalis (ant); Cb Caenorhabditis briggsae (nematode); Ce Caenorhabditis elegans (nematode); Cg Crassostrea gigas (oyster); Ci Ciona intestinalis (tunicate); Cj Callithrix jacchus (marmoset); Cp Cavia porcellus (guinea pig); Cph Caluromys philander (opossum); Cpi Culex pipiens (mosquito); Dm Drosophila melanogaster (fruit fly); Gg Gallus gallus (chicken); Hs Homo sapiens (human); Mm Mus musculus (mouse); Mo Microtus ochrogaster (vole); Ms Manduca sexta (moth); Oc Oryctolagus cuniculus (rabbit); Ol Oryzias latipes (teleost fish); Pa Periplaneta americana (cockroach); Pc Procambarus clarkii (crustacean); Rc Rana catesbeiana (bull frog); Rn Rattus norvegicus (rat); Ss Sus scrofa (pig); Tc Tribolium castaneum (beetle); Tn Typhlonectes natans ("rubber eel", amphibian); Tni Tetraodon nigroviridis (teleost fish); Tv Trichosurus vulpecula (opossum).
Vadakkadath Meethal et al. BMC Evolutionary Biology 2006 6:103 doi:10.1186/1471-2148-6-103 |