Table 4

Predicted calmodulin-binding sites in Arabidopsis and rice IQD proteins

Groupa

Gene Identifier

Protein

Predicted calmodulin binding sequenceb


Ia

At1g51960

IQD27

(98) EERWAAVKIQKVFRGSL (114)

At3g16490

IQD26

(137) ALVRGYLVRKRAAET (151)

At4g29150

IQD25

(65) KERRTHAIAVA (75) (83) DAAVAAAKAAAA (94)

At5g07240

IQD24

(105) EYKAAMKIQSAFRGYLA (121)

At5g62070

IQD23

(115) QENIAAMKIQSAFRGYLAR (133)

At4g23060

IQD22

(189) LKGLVRLQAIVRGHIERK (205)

Ib

At3g49260

IQD21

(137) RALRALKGL (145)

At3g51380

IQD20

(9) VVRRKLLRRSQSR (22)

At4g14750

IQD19

(155) ALITLQAKAREQRIRMIG (172)

Ic

At3g49380

IQD15

(140) ALVRGHNVRRRTSITLQRVQALVRI (164)

At4g10640

IQD16

(235) EIAIKREKAQALALSNQI (252)

At1g01110

IQD18

(146) LVKLQALVRGHNVRKQ (161)

At4g00820

IQD17

(157) LVKLQALVRGHNVRKQA (172)

II

At2g43680

IQD14

(1) MVKKGSWFSAI (11)

At3g59690

IQD13

(1) MGKKGSWFSAI (11)

At5g03960

IQD12

(8) FGWMKRLFICEAKARAEK (24)

At5g13460

IQD11

(5) KGLFTVLKRIFISEVN (20)

IIIa

At1g17480

IQD7

(125) IFRGRQVRKQAAVTLRC (141)

At1g72670

IQD8

(119) VRIQAIFRGRQVRK (132)

At2g26180

IQD6

(116)VRGRQVRKQAAVTLRCMQALVRVQARVRARR (146)

At3g22190

IQD5

(137) QALVRVQARVRARRV (151)

At2g33990

IQD9

(59) AYKARKSLRRLKGIARAKLS (78)

At3g15050

IQD10

(61) RAFKARKRLCS (71)

IIIb

At3g09710

IQD1

(103) GKSKEEAAAIL (113)

At5g03040

IQD2

(141) VRLKLLMEGSVVKQAAN (158)

At3g52290

IQD3

(213) MLNKQVATMRREKALAYAF (231)

At2g26410

IQD4

(245) RSVNRKEASVRRERALAY (262)

IV

At1g14380

IQD28

(106) AHQARRAFRTL (116)

At2g02790

IQD29

(159) VKVQALVRGKKARSS (173)

At1g74690

IQD31

(149) LVRRQAVATLF (160)

At1g18840

IQD30

(159) GIVRLQALARGREIRHSDIG (178)

At1g19870

IQD32

(230) ARRELLRSKKVI (241)

At5g35670

IQD33

(270) RERALAYAFSQQL (282)

I

Os01m00895

OsIQD22

(134) PRGRAAAVKIQTAFRGFL (151)

Os05m00863

OsIQD21

(434) NRVQEAFNFKTAVVGRLDR (453)

Os01m05259

OsIQD20

(94) MVIQKAYRGYLA (105)

Os05m04170

OsIQD19

(87) AVMIQKAFRGYLARRALRA (107)

(110) LKALVKIQALVRGYLVRKQAATT (129)

Os10m02409

OsIQD18

(48) KKRWSFRRSSASASAAAM (65)

(170) TLRRMQALLVAQARlRAQ (187)

Os03m00584

OsIQD17

(28) ALPGEAAKEKRWSFRRPVHG (47)

Os03m04199

OsIQD16

(138) KLQALVRGHLVRRQAS (153)

Os04m04664

OsIQD15

(121) KREEYAAVRIQAAFRG (136)

Os08m00125

OsIQD14

(269) TRKDAALKRERALSYA (284)

Os02m01875

OsIQD13

(127) ASREERAAVRIQ (138)

Os06m02303

OsIQD12

(120) AGREERAAVRIQA (132)

II

Os01m06663

OsIQD11

(1) MGKKGGWITA (11)

IIIa

Os05m04352

OsIQD10

(114) RLVRRQLAVTLKCMNALLR (132)

Os01m04963

OsIQD9

(120) RGRRVRKQLAVTLKCMQALV (139)

Os01m00929

OsIQD5

(143) QVRKQAAVTLRCMQALVRVQARIRARRVRMST (176)

Os12m04168

OsIQD8

(147) AQARVRARRVRISL (160)

Os03m04309

OsIQD3

(161) ARVRARQVRVSLE (173)

Os03m05627

OsIQD4

(113) FLARRARRALKGL (125)

Os06m00539

OsIQD7

(174) VKRERAMAYAFNHQWRAR (191)

IIIb

Os05m00240

OsIQD1

(219) AVRRERALAYAFSHQWK (235)

Os01m06082

OsIQD2

(1) MGKKGNWFSAV (11)

Os05m03604

OsIQD6

(132) RVYLGRRSQRARGLDRL (148)

IV

Os05m04307

OsIQD23

(160) WLIVKFQALVRGRNVR (174)

Os01m05025

OsIQD24

(155) LVRGRNVRLSGASI (168)

Os04m05532

OsIQD25

(295) LVRRQAAESLQ (305)

Os03m00334

OsIQD26

(154) GNAKLGRR (161)

Os04m04570

OsIQD27

(8) LEKKRVITVQGRDKAGRPI (26)

(132) GKLRYVSRLEYLWAHVRKG (150)

Os06m03925

OsIQD28

(252) LAYAFSQQLRSCGGGGGGTT (271)


a Roman numerals correspond to subfamilies and subgroups of IQD proteins as used in Figure 1 and Figure 3.

b Putative calmodulin-binding sites predicted by the Calmodulin Target Database [40] are shown for strings of amino acid residues with a score of at least "7". Residues with the highest score ("9") are highlighted in bold.

Abel et al. BMC Evolutionary Biology 2005 5:72   doi:10.1186/1471-2148-5-72

Open Data