Table 6 |
|||||||||
|
Summary of variable positions in the hypervariable region of modern and ancient muskoxen |
|||||||||
|
Source |
Sample |
2 |
104 |
144 |
145 |
148 |
166 |
168 |
178 |
|
|
|||||||||
|
Modern |
SH-OMMod01 |
C |
C |
G |
C |
C |
T |
C |
T |
|
SH-OMMod02 |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
SH-OMMod03 |
. |
. |
. |
. |
. |
. |
T |
. |
|
|
SH-OMMod04 |
. |
. |
. |
. |
. |
. |
T |
C |
|
|
SH-OMMod05 |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
SH-OMMod06 |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
SH-OMMod07 |
. |
. |
. |
. |
. |
. |
T |
. |
|
|
SH-OMMod08 |
. |
. |
. |
. |
. |
. |
T |
. |
|
|
SH-OMModCl |
. |
. |
A |
. |
. |
. |
- |
. |
|
|
New World |
SH-Yuk01 |
. |
. |
A |
T |
. |
. |
- |
. |
|
SH-OMArA03 |
. |
. |
. |
. |
. |
. |
- |
. |
|
|
SH-OMArA04 |
. |
. |
. |
. |
. |
. |
- |
. |
|
|
SH-OMArA05 |
. |
. |
. |
. |
. |
. |
- |
. |
|
|
Old World |
SH-OMWra2 |
nd |
. |
. |
. |
. |
. |
- |
. |
|
SH-OMYak12 |
nd |
. |
. |
. |
. |
. |
- |
. |
|
|
SH-OMTai23658.A |
. |
. |
. |
. |
. |
. |
- |
. |
|
|
SH-OMTai23658.B |
. |
. |
A |
. |
. |
. |
- |
. |
|
|
EH-OMTai14 |
G |
T |
A |
. |
. |
. |
- |
. |
|
|
EH-OMTai38 |
. |
T |
A |
. |
T |
A |
- |
. |
|
|
EH-OMTai39 |
G |
T |
A |
. |
. |
. |
- |
. |
|
|
EH-OMTai46 |
. |
T |
A |
. |
T |
A |
- |
. |
|
|
|
|||||||||
|
Notes. – Sample names from table 1. Base positions numbered from first readable base from 5' amplified fragment. Identity to first sequence designated by a dot; differences indicated by base sequence. Deletions indicated by "-". For some samples, specific bases were not covered; these are designated "nd" (not determined). [Accession numbers for modern sequences are GenBank: NC005044, U47063, U47065, U47067, U47069, U47071, U47073, U47075.] Extinct haplotypes as determined for cyt b and HV region are italicized. |
|||||||||
|
MacPhee et al. BMC Evolutionary Biology 2005 5:49 doi:10.1186/1471-2148-5-49 |
|||||||||
