Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
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* Corresponding author: Eric Bapteste eric.bapteste@dal.ca
BMC Evolutionary Biology 2005, 5:27 doi:10.1186/1471-2148-5-27
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BioMed Central: 9 citations
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Research
A new, fast algorithm for detecting protein coevolution using maximum compatible cliques Alex Rodionov, Alexandr Bezginov, Jonathan Rose, Elisabeth RM Tillier Algorithms for Molecular Biology 2011, 6:17 (14 June 2011) |
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Software
SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees Tobias Hill, Karl JV Nordström, Mikael Thollesson, Tommy M Säfström, Andreas KE Vernersson, Robert Fredriksson, Helgi B Schiöth BMC Evolutionary Biology 2010, 10:42 (13 February 2010) |
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Methodology article
Comparison of phylogenetic trees through alignment of embedded evolutionary distances Kwangbom Choi, Shawn M Gomez BMC Bioinformatics 2009, 10:423 (15 December 2009) |
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Review
Prokaryotic evolution and the tree of life are two different things Eric Bapteste, Maureen A O'Malley, Robert G Beiko, Marc Ereshefsky, J Peter Gogarten, Laura Franklin-Hall, François-Joseph Lapointe, John Dupré, Tal Dagan, Yan Boucher, William Martin Biology Direct 2009, 4:34 (29 September 2009) This article is part of a collection on Evolutionary Biology 150... From philosophical, scientific and epistemological perspectives, we argue that the tree of life can not successfully account for prokaryotic evolution, and we briefly set out alternative models to study their evolution.
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Research article
Philippe Lemey, Martin Lott, Darren P Martin, Vincent Moulton BMC Bioinformatics 2009, 10:126 (27 April 2009) |
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Software
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships Cuong Than, Derek Ruths, Luay Nakhleh BMC Bioinformatics 2008, 9:322 (28 July 2008) |
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Research article
Estimating the extent of horizontal gene transfer in metagenomic sequences Javier Tamames, Andrés Moya BMC Genomics 2008, 9:136 (24 March 2008) |
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Method
DarkHorse: a method for genome-wide prediction of horizontal gene transfer Sheila Podell, Terry Gaasterland Genome Biology 2007, 8:R16 (2 February 2007) DarkHorse is a new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins. |
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Methodology article
Phylogenetic identification of lateral genetic transfer events Robert G Beiko, Nicholas Hamilton BMC Evolutionary Biology 2006, 6:15 (11 February 2006) EEEP, a new algorithm capable of analyzing large phylogenomic data sets, identifies putative lateral genetic transfer events through the economical comparison of discordant phylogenetic trees by using evolutionarily reasonable constraints.
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