Table 3

Species list
Phylum Subphylum Class Subclass Order Species Accession number Reference
Cnidaria Anthozoa Hexacorallia Actiniaria
    Metridium senile
[GenBank:NC_000933] [68]
    Nematostella
    sp
[GenBank:NC_008164] [22]
Antipatharia
    Chrysopathes formosa
[GenBank:NC_008411] [39]
    Cirripathes lutkeni
[GenBank:NC_018377] this study
    Leiopathes glaberrima
[GenBank:FJ597643] & [GenBank:FJ597644] [69]
Corallimorpharia
    Discosoma
    sp
[GenBank:NC_008071] [22]
    Rhodactis
    sp
[GenBank:NC_008158] [22]
    Ricordea florida
[GenBank:NC_008159] [22]
Scleractinia
    Acropora tenuis
[GenBank:NC_003522] [70]
    Agaricia humilis
[GenBank:NC_008160] [22]
Anacropora matthai [GenBank:NC_006898] Unpublished
    Astrangia
    sp
[GenBank:NC_008161] [22]
Colpophyllia natans [GenBank:NC_008162] [22]
    Lophelia pertusa
[GenBank:NC_015143] [71]
    Madracis mirabilis
[GenBank:NC_011160] [72]
    Montastraea annularis
[GenBank:NC_007224] [73]
Montastraea faveolata [GenBank:NC_007226] [73]
Montastraea franksi [GenBank:NC_007225] [73]
    Montipora cactus
[GenBank:NC_006902] Unpublished
Mussa angulosa [GenBank:NC_008163] [22]
Pavona clavus [GenBank:NC_008165] [22]
Pocillopora damicornis [GenBank:NC_009797] [74]
Pocillopora eydouxi [GenBank:NC_009798] [74]
    Porites porites
[GenBank:NC_008166] [22]
Seriatopora caliendrum [GenBank:NC_010245] [72]
Seriatopora hystrix [GenBank:NC_010244] [72]
Siderastrea radians [GenBank:NC_008167] [22]
    Stylophora pistillata
[GenBank:NC_011162] [72]
Zoantharia
    Palythoa
    sp
[GenBank: DQ640650] [22]
    Savalia savaglia
[GenBank:NC_008827] [75]
Ceriantharia
    Ceriantheopsis americanus
[GenBank:JX023261-JX023265] this study
Octocorallia Alcyonacea
    Acanella eburnea
[GenBank:NC_011016] [76]
    Briareum asbestinum
[GenBank:NC_008073] [22]
    Corallium konojoi
[GenBank:NC_015406] [77]
Dendronephthya castanea [GenBank: GU047877] [10]
Dendronephthya gigantean [GenBank:NC_013573] Unpublished
Dendronephthya mollis [GenBank: HQ694725] [10]
Dendronephthya putteri [GenBank: HQ694726] [10]
Dendronephthya suensoni [GenBank: GU047878] [10]
Echinogorgia complexa [GenBank: HQ694727] [10]
    Euplexaura crassa
[GenBank: HQ694728] [10]
Keratoisidinae sp [GenBank:NC_010764] [78]
Paracorallium japonicum [GenBank:NC_015405] [77]
    Pseudopterogorgia bipinnata
[GenBank:NC_008157] [22]
Sarcophyton glaucum [GenBank: AF064823] & [GenBank: AF063191] [79,80]
    Scleronephthya gracillimum
[GenBank: GU047879] [10]
    Sinularia peculiaris
[GenBank:NC_018379] this study
Helioporacea
    Heliopora coerulea
[GenBank:JX023267-JX023272] this study
Pennatulacea
    Renilla mulleri
[GenBank:NC_018378] this study
    Stylatula elongata
[GenBank:NC_018380] this study
Medusozoa Cubozoa Carybdeida
    Alatina moseri
[GenBank:JN700951-JN700958] [27]
    Carukia barnesi
[GenBank:JN700959-JN700962] [27]
    Carybdea xaymacana
[GenBank:JN700977-JN700983] [27]
Chirodropida
    Chironex fleckeri
[GenBank:JN700963-JN700968] [27]
    Chiropsalmus quadrumanus
[GenBank:JN700969-JN700974] [27]
Hydrozoa Trachylina Limnomedusae
    Cubaia Aphrodite
[GenBank:JN700942] [27]
Hydroidolina Aplanulata
    Ectopleura larynx
[GenBank:JN700938] [27]
    Hydra magnipapillata
[GenBank:NC_011220] & [GenBank:NC_01122] [81]
    Hydra oligactis
[GenBank:NC_010214] [8]
    Hydra vulgaris
[GenBank:BN001179] & [GenBank:BN001180] [81]
Capitata
    Millepora platyphylla
[GenBank:JN700943] [27]
    Pennaria tiarella
[GenBank:JN700950] [27]
Filifera III
    Clava multicornis
[GenBank:JN700935] [27]
Filifera IV
    Nemopsis bachei
[GenBank:JN700947] [27]
Leptothecata
    Laomedea flexuosa
[GenBank:JN700945] [27]
Scyphozoa Coronatae
    Linuche unguiculata
[GenBank:JN700939] [27]
Discomedusae Rhizostomeae
    Cassiopea Andromeda
[GenBank:JN700934] [27]
    Cassiopea frondosa
[GenBank:JN700936] [27]
    Catostylus mosaicus
[GenBank:JN700940] [27]
    Rhizostoma pulmo
[GenBank:JN700987] & [GenBank:JN700988] [27]
Semaeostomeae
    Aurelia aurita
    A
[GenBank:NC_008446] [11]
    Aurelia aurita
    B
[GenBank: HQ694729] [10]
    Chrysaora quinquecirrha
[GenBank: HQ694730] [10]
    Chrysaora
    sp
[GenBank:JN700941] [27]
    Cyanea capillata
[GenBank:JN700937] [27]
    Pelagia noctiluca
[GenBank:JN700949] [27]
Staurozoa Stauromedusae
    Craterolophus convolvulus
[GenBank:JN700975] & [GenBank:JN700976] [27]
    Haliclystus sanjuanensis
[GenBank:JN700944] [27]
    Lucernaria janetae
[GenBank:JN700946] [27]
Placozoa
    BZ10101
[GenBank:NC_008832] [82]
    BZ243
[GenBank:NC_008834] [82]
    BZ49
[GenBank:NC_008833] [82]
    Trichoplax adhaerens
[GenBank:NC_008151] [83]
Porifera Homoscleromorpha
    Corticium candelabrum
[GenBank:NC_014872] [38]
    Oscarella carmela
[GenBank:NC_009090] [84]
    Plakina monolopha
[GenBank:NC_014884] [38]
Plakinastrella cf. onkodes [GenBank:NC_010217] [84]
Demospongiae G1 = Keratosa
    Igernella notabilis
[GenBank:NC_010216] [84]
    Ircinia strobilina
[GenBank:NC_013662] [85]
G2 = Myxospongiae
    Aplysina fulva
[GenBank:NC_010203] [84]
    Chondrilla aff. nucula
[GenBank:NC_010208] [84]
Halisarca dujardini [GenBank:NC_010212] [84]
G3 = marine Haplosclerida
    Amphimedon compressa
[GenBank:NC_010201] [84]
Callyspongia plicifera [GenBank:NC_010206] [84]
    Xestospongia muta
[GenBank:NC_010211] [84]
G4 = Democlavia
    Agelas schmidti
[GenBank:NC_010213] [84]
Axinella corrugata [GenBank:NC_006894] [84]
Cinachyrella kuekanthali [GenBank:NC_010198] [84]
    Ephydatia muelleri
[GenBank:NC_010202] [84]
Geodia neptuni [GenBank:NC_006990] [37]
Lubomirskia baicalensis [GenBank:NC_013760] [86]
Suberites domuncula [GenBank:NC_010496] [87]
    Tethya actinia
[GenBank:NC_006991] [37]
Topsentia ophiraphidites [GenBank:NC_010204] [84]

List of species, with their accession number and reference, used for this studies. Bold species are from this study. Underline species are those included into the codon alignments.

Kayal et al.

Kayal et al. BMC Evolutionary Biology 2013 13:5   doi:10.1186/1471-2148-13-5

Open Data