Snapshot of the collection of mutations obtained at the end of the common host phase. The first line represents the full TEV genome with the position of the eleven mature viral proteins within the ORF. The six other lines correspond each to one evolutionary history in Phase 1 and all the mutations present at the end of Phase 2 for this evolutionary history are represented. Full circles represent non-synonymous mutations; empty circles represent synonymous mutations. Mutations that are unique in the data set are represented in black, mutations shared at the end of Phase 2 between lineages sharing a same host in Phase 1 are represented in orange and mutations shared at the end of Phase 2 between lineages that do not share a same host in Phase 1 are represented in blue.
Bedhomme et al. BMC Evolutionary Biology 2013 13:46 doi:10.1186/1471-2148-13-46