Table 3

Codon usage of 12 protein coding genes of Bursaphelenchus xylophilus (Bx) and Pratylenchus vulnus (Pv) mtDNAs
Codon AA No. % Codon AA No. %
Bx Pv Bx Pv Bx Pv Bx Pv
TTT Phe 649 483 19.12 14.49 TAT Tyr 160 129 4.71 3.87
TTC Phe 18 38 0.53 1.14 TAC Tyr 14 24 0.41 0.72
TTA Leu 459 377 13.52 11.31 TAA * 0 0 0.00 0.00
TTG Leu 73 107 2.15 3.21 TAG * 0 0 0.00 0.00
CTT Leu 26 46 0.77 1.38 CAT His 46 45 1.36 1.35
CTC Leu 2 1 0.06 0.03 CAC His 0 2 0.00 0.06
CTA Leu 12 33 0.35 0.99 CAA Gln 30 30 0.88 0.90
CTG Leu 0 8 0.00 0.24 CAG Gln 8 26 0.24 0.78
ATT Ile 260 188 7.66 5.64 AAT Asn 146 99 4.30 2.97
ATC Ile 6 13 0.18 0.39 AAC Asn 8 5 0.24 0.15
ATA Met 129 166 3.80 4.98 AAA Lys 85 67 2.50 2.01
ATG Met 17 19 0.50 0.57 AAG Lys 14 33 0.41 0.99
GTT Val 125 143 3.68 4.29 GAT Asp 60 55 1.77 1.65
GTC Val 2 8 0.06 0.24 GAC Asp 6 5 0.18 0.15
GTA Val 91 78 2.68 2.34 GAA Glu 48 54 1.41 1.62
GTG Val 22 19 0.65 0.57 GAG Glu 26 35 0.77 1.05
TCT Ser 85 90 2.50 2.70 TGT Cys 33 41 0.97 1.23
TCC Ser 1 13 0.03 0.39 TGC Cys 1 0 0.03 0.00
TCA Ser 29 38 0.85 1.14 TGA Trp 50 59 1.47 1.77
TCG Ser 3 7 0.09 0.21 TGG Trp 12 28 0.35 0.84
CCT Pro 49 41 1.44 1.23 CGT Arg 25 16 0.74 0.48
CCC Pro 1 4 0.03 0.12 CGC Arg 0 1 0.00 0.03
CCA Pro 16 28 0.47 0.84 CGA Arg 3 13 0.09 0.39
CCG Pro 3 4 0.09 0.12 CGG Arg 3 3 0.09 0.09
ACT Thr 67 62 1.97 1.86 AGT Ser 89 86 2.62 2.58
ACC Thr 0 13 0.00 0.39 AGC Ser 4 5 0.12 0.15
ACA Thr 18 30 0.53 0.90 AGA Ser 103 95 3.03 2.85
ACG Thr 2 4 0.06 0.12 AGG Ser 20 35 0.59 1.05
GCT Ala 61 53 1.80 1.59 GGT Gly 77 101 2.27 3.03
GCC Ala 0 7 0.00 0.21 GGC Gly 3 8 0.09 0.24
GCA Ala 14 20 0.41 0.60 GGA Gly 51 58 1.50 1.74
GCG Ala 5 4 0.15 0.12 GGG Gly 24 31 0.71 0.93

Sultana et al.

Sultana et al. BMC Evolutionary Biology 2013 13:12   doi:10.1186/1471-2148-13-12

Open Data