Additional file 5.
Figure S3. Alignment of transformer of Drosophila species and the Tephritidae only. Alignment used for analyses of transformer including sequences from Drosophila species and the Tephritidae. The alignment is shown translated into amino acids. Sites under relaxed selection in the tephritid clade are indicated by a "1" in the line "Clade Teph ω = 1", those under relaxed selection in the Drosophila clade are indicated by a "1" in the line "Clade Droso ω = 1". These site-specific results are based on Bayes Empirical Bayes analyses mentioned in the main text. The domains that are conserved in the Tephritids but absent in Drosophila and longer that 10 AAs are from position 2 to 99, 215 to 249, 295 to 317 and 370 to 380 of A. serpentina.
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Mullon et al. BMC Evolutionary Biology 2012 12:5 doi:10.1186/1471-2148-12-5