Table 1

Summary of the identified somatostatin receptor sequences analyzed in this study
Genus and species (genome assembly version) Assigned sequence names Chromosome/linkage group /genomic scaffold locations
Mammals Homo sapiens Human SSTR1 14: 38.68 Mb
(GRCh37) Human SSTR2 17: 71.16 Mb
Human SSTR3 22: 37.60 Mb
Human SSTR4 20: 23.02 Mb
Human SSTR5 16: 1.12 Mb
Mus musculus Mouse SSTR1 12: 59.31 Mb
(NCBIM37) Mouse SSTR2 11: 113.48 Mb
Mouse SSTR3 15: 78.37 Mb
Mouse SSTR4 2: 148.22 Mb
Mouse SSTR5 17: 25.63 Mb
Canis familiaris Dog SSTR1 8: 19.58 Mb
(BROAD2) Dog SSTR2 9: 10.00 Mb
Dog SSTR3 10: 30.40 Mb
Dog SSTR5 6: 42.65 Mb
Monodelphis domestica Opossum SSTR1 1: 278.65 Mb
(BROADO5) Opossum SSTR2 2: 217.49 Mb
Opossum SSTR3 8: 91.98 Mb
Opossum SSTR4 1: 598.18 Mb
Opossum SSTR5 6: 153.47 Kb
Birds Gallus gallus Chicken SSTR1 5: 39.75 Mb
(WASHUC2) Chicken SSTR2 18: 9.00 Mb
Chicken SSTR3 1: 53.39 Mb
Chicken SSTR4 3: 3.27 Mb
Chicken SSTR5 14: 5.64 Mb
Reptiles Anolis carolinensis Anole lizard SSTR1 a
(AnoCar2.0) Anole lizard SSTR2 2: 96.75 Mb
Anole lizard SSTR3 5: 22.84 Mb
Anole lizard SSTR5 GL343263.1: 1.76 Mb
Amphibians Xenopus tropicalis Frog SSTR1 GL172781.1: 1.07 Mb
(JGI_4.2) Frog SSTR2 GL172812.1: 1.79 Mb
Frog SSTR3 GL172724.1: 1.41 Mb
Frog SSTR4 GL172884.1: 512.43 Kb
Frog SSTR5 GL172659.1: 446.17 Kb
Coelacanth Latimeria chalumnae Coelacanth SSTR1 JH126598.1: 0.53 Mb
(LatCha1) Coelacanth SSTR2 JH126581.1: 3.45 Mb
Coelacanth SSTR3 JH129649.1: 0.21 Mb
Coelacanth SSTR4 JH126648.1: 2.61 Mb
Coelacanth SSTR5 JH129247.1: 0.21 Mb
Coelacanth SSTR6 JH127490.1: 0.26 Mb
Coelacanth SSTRX JH126581.1: 3.47 Mb
Spotted gar Lepisosteus oculatus Spotted gar SSTR1 LG7: 4.44 Mb
(LepOcu1) Spotted gar SSTR2 LG10: 34.84 Mb
Spotted gar SSTR3 LG12: 34.19 Mb
Spotted gar SSTR5 LG13: 4.69 Mb
Spotted gar SSTR6 LG28: 1.08 Mb
Teleost fish Danio rerio Zebrafish SSTR1 17: 10.35 Mb
(Zv9) Zebrafish SSTR2a 3: 63.08 Mb
Zebrafish SSTR2b 12: 1.73 Mb
Zebrafish SSTR3a 3: 29.75 Mb
Zebrafish SSTR3b Scaffold Zv9_NA631: 3.42 Kb
Zebrafish SSTR5a 24: 16.78 Mb
Zebrafish SSTR5b 1: 55.01 Mb
Zebrafish SSTR6 7: 19.63 Mb
Gasterosteus aculeatus Stickleback SSTR2a groupXI: 9.50 Mb
(BROADS1) Stickleback SSTR2b groupV: 6.81 Mb
Stickleback SSTR3a groupXI: 15.59 Mb
Stickleback SSTR5a groupXI: 11.72 Mb
Stickleback SSTR5b groupIX: 14.95 Mb
Stickleback SSTR6 scaffold_47: 436.21 Kb
Oryzias latipes Medaka SSTR2a 8: 10.93 Mb
(MEDAKA1) Medaka SSTR2b scaffold5841: 160 bp
Medaka SSTR3a 8: 2.80 Mb
Medaka SSTR3b 1: 29.10 Mb
Medaka SSTR5a 8: 13.75 Mb
Tetraodon nigroviridis Green puffer SSTR2a 3: 10.44 Mb
(TETRAODON8) Green puffer SSTR2b 2: 4.83 Mb
Green puffer SSTR3a 3: 15.06 Mb
Green puffer SSTR3b 18: 10.39 Mb
Green puffer SSTR3c Un_random: 59.49 Mb
Green puffer SSTR5b 18: 2.40 Mb
Takifugu rubripes Fugu SSTR2a scaffold_115: 411.36 Kb
(FUGU4) Fugu SSTR2b scaffold_3: 3.77 Kb
Fugu SSTR3a scaffold_359: 200.56 Kb
Fugu SSTR3b scaffold_407: 33.36 Kb
Fugu SSTR5b scaffold_189: 267.65 Kb
Fugu SSTR6 scaffold_164: 38.74 Kb
Invertebrates Drosophila melanogaster Fruit fly Drostar1 3L: 18.55 Mb
(BDGP5) Fruit fly Drostar2 3L: 18.48 Mb

a The Anole lizard SSTR1 sequence could not be identified in the most updated assembly (AnoCar2.0), however it is located on genomic scaffold_0 at 284.26 Kb in the previous assembly (AnoCar1.0, Ensembl database version 60).

Ocampo Daza et al.

Ocampo Daza et al. BMC Evolutionary Biology 2012 12:231   doi:10.1186/1471-2148-12-231

Open Data