Table 2

List of pseudorecombination events inferred in concatenated DNA-A and DNA-B sequences
Event number DNA-B clade * Alignment position DNA-A * Original DNA-A * B partϕ Methodsα P-valueβ
Begin End
1 EACMV-like 2858 6017 EACMV-UG EACMV Full B RGBMcST 1.9x10-71
2 EACMV-like 2883 $ 6017 EACMKV EACMV Full B RGBMCST 9.9x10-24
3 EACMV-like 2883 $ 6017 EACMKV EACMV Full B RGMCST 6.7x10-61
4 EACMV-like 2883 6017 $ EACMV EACMV Full B RBGMCST 1.4x10-28
5 EACMV-like 2883 $ 6017 EACMKV EACMV Full B RGBMCST 1.7x10-63
6 EACMV-like 3635 5950 EACMV-UG EACMZV pCR+ORFs RGBMCST 2.7x10-38
7 EACMV-like 2883 $ 5973 $ EACMV EACMV-UG Full B RGBMCST 2.2x10-36
8 EACMV-like 2883 $ 6017 EACMV-UG EACMKV Full B RGBMCST 8.1x10-51
9 EACMV-like 2820 5924 EACMV EACMV Full B GBMCST 7.3x10-26
10 EACMV-like 2883 6017 EACMV EACMV Full B RGbMCST 2.9x10-12
11 EACMV-like 2883 6017 EACMV EACMV Full B GMCST 8.7x10-8
12 EACMV-like 3711 6017 EACMZV EACMZV pCR+ORFs GMCST 8.0x10-25
13 EACMV-like 3689 6017 $ EACMV EACMZV pCR+ORFs RGBMcST 8.6x10-13
14 EACMV-like 3789 5501 $ EACMKV EACMZV pCR+pORFs RBMCST 2.1x10-6
15 EACMV-like 1 2201 $ EACMV EACMV Full B rbMCST 1.3x10-4

* EACMV-like comprises B components associated with EACMV, EACMKV, EACMZV and SACMV.

$ Breakpoints not inferred by RDP.

α R: RDP; G: GENECONV; B: Bootscan; M: MaxChi; C: Chimaera; S: SiScan; T: 3Seq. Upper-case letters imply that a method detected recombination with a multiple comparison corrected P-value < 0.05, lower-case letters imply that the method detected recombination with a multiple comparison corrected P-value > 0.05

β The reported P-value is for the method in bold type and is the best P-value calculated for the region in question.

ϕ The portion of the DNA-B “transferred” between the DNA-A sequences during each re-assortment event is indicated (p: partial; CR: Common Region; ORFs: Open-Reading Frames).

De Bruyn et al.

De Bruyn et al. BMC Evolutionary Biology 2012 12:228   doi:10.1186/1471-2148-12-228

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