Table 1

List of recombination events inferred in EACMV-like sequences
Event number Recombinant * Region Minor Parent * Major Parent * Methodsα P-valueβ
Begin End
DNA-A 1 EACMV-UG 545 1008 ACMV EACMV RGBMCST 1.2x10-71
2 EACMCV 1052 1872 Unknown EACMV RGBMCST 1.3x10-89
3 EACMKV, EACMZV, SACMV 1835 9 ToLCV-like EACMV RGBMCST 6.7x10-53
4 EACMV-KE 1878 $ 2083 EACMZV EACMV RGBMCST 1.4x10-24
5 EACMMV, SACMV 178 999 $ ToLCV/TYLCV-like EACMV RGBMCST 4.9x10-20
6 EACMMV 1843 $ 2311 EACMKV EACMV RGBMCST 6.0x10-15
7 EACMZV 1840 $ 2184 EACMKV Unknown RGBMCST 6.7x10-22
8 EACMV, EACMMV 2052 $ 2360 Unknown Unknown RGBMCST 7.2x10-16
9 EACMV 1821 1935 ACMV EACMV RGBs 1.0x10-10
10 EACMKV, SACMV 2625 2742 $ EACMV-like Unknown RGBMCS 1.3x10-11
11 ACMV 1788 1856 EACMV ACMV RgB 3.3x10-5
12 ToLCCV 2591 2646 EACMV ToLCCV RgBS 9.1x10-5
13 EACMV-like 190 451 Unknown Unknown rBcS 5.7x10-12
14 EACMCV 1056 $ 1126 EACMCV Unknown rgBS 6.0x10-5
15 EACMV 2662 2684 Unknown EACMV Rgb 3.7x10-2
DNA-B 1 CMMGV 1564 2688 Unknown EAC RGBMCST 1.6x10-78
2 EACMV-[SC] 1124 1454 EACMCV-like EAC RGBMCST 5.8x10-21
3 EAC 2461 2704 EAC EAC RGBMCST 3.3x10-12
4 EAC 2672 5 Unknown EAC RGBMCST 5.6x10-13
5 CAM 1496 2503 EACMV-[SC]-like Unknown RGBMC 2.2x10-9
6 EAC 2612 37 EAC EAC RGBMCS 1.3x10-11
7 EAC 422 1647 Unknown EAC RMCST 1.3x10-6
8 EAC 723 1143 Unknown EAC RGBMCSt 3.2x10-6
9 EAC 1718 2751 EAC EAC BMCST 1.7x10-15

* EAC corresponds to B components associated with EACMV, EACMKV, EAMCZV; CAM corresponds to EACMCV-B; CMMGV, Cassava mosaic Madagascar virus[MG:Tol:06]; EACMV-[SC] corresponds to East African cassava mosaic virus isolated in Seychelles; ToLCV, Tomato leaf curl virus; TYLCV, Tomato yellow leaf curl virus; ToLCCV: Tomato leaf curl Comoros virus.

$ Breakpoints not inferred by RDP.

α R: RDP; G: GENECONV; B: Bootscan; M: MaxChi; C: Chimaera; S: SiScan; T: 3Seq. Upper-case letters imply that a method detected recombination with a multiple comparison corrected P-value < 0.05, lower-case letters imply that the method detected recombination with a multiple comparison corrected P-value > 0.05

β The reported P-value is for the method in bold type and is the best P-value calculated for the region in question.

De Bruyn et al.

De Bruyn et al. BMC Evolutionary Biology 2012 12:228   doi:10.1186/1471-2148-12-228

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