Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D
Department of Biology, Stanford University, Hopkins Marine Station, 93950, Pacific Grove, CA USA
BMC Evolutionary Biology 2012, 12:217 doi:10.1186/1471-2148-12-217Published: 12 November 2012
Additional file 1: Table S1:
Total number of sequence reads and average read length for each coral branch after quality trimming and adapter clipping.
Format: XLSX Size: 56KB Download file
Additional file 2: Table S2:
Clade specific sequences used to quantitatively characterize Symbiodinium communities using high-throughput transcriptome sequence data.
Format: XLSX Size: 23KB Download file
Additional file 3: Table S3:
Symbiodinium community characterizations with read counts broken down by individual loci.
Format: XLSX Size: 44KB Download file
Additional file 4: Figure S1:
Correlation between estimates of Symbiodinium community composition.
Format: PDF Size: 57KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 5: Table S4:
Read/contig counts at each step along the process of obtaining high-quality Symbiodinium de novo assemblies.
Format: XLSX Size: 10KB Download file
Additional file 6: Table S5:
4-taxa (ABCD) analyses testing dN/dS along the clade D lineage.
Format: XLSX Size: 66KB Download file
Additional file 7: Table S6:
3-taxa (BCD) analyses testing dN/dS along the clade D lineage.
Format: XLSX Size: 154KB Download file
Additional file 8: Table S7:
4-taxa (ABCD) analyses testing dN/dS along the clade C lineage.
Format: XLSX Size: 67KB Download file
Additional file 9: Table S8:
3-taxa (BCD) analyses testing dN/dS along the clade C lineage.
Format: XLSX Size: 59KB Download file
Additional file 10: Table S9:
Results of the Gene Ontology enrichment analyses of four different subsets of orthologs.
Format: XLSX Size: 46KB Download file
Additional file 11: Table S10:
Loci exhibiting significantly elevated and/or depressed dN/dS along both the clade C and clade D lineages.
Format: XLSX Size: 55KB Download file