Table 2

snoRNAs in deeply conserved introns
Group snoRNA Species Supergroup class Cross-Supergroup comparison
ENSG00000221983 H06I04.8 C. elegans Opisthokonts CD No evidence for homology
RF00332 A. thaliana Archaeplastida CD
ENSG00000142541 RF00133 Mammals Opisthokonts CD Unrelated classes //
FBgn0260002 D. melanogaster Opisthokonts HACA No evidence for homology
OssnoR30 O. sativa Archaeplastida CD
ENSG00000143947 H06I04.8 C. elegans Opisthokonts HACA Unrelated classes
AtsnoR91 A. thaliana Archaeplastida CD
RF00332 O. sativa Archaeplastida CD
ENSG00000213516 RF00270 Vertebrates Opisthokonts CD Unrelated classes
RF01287 V. vinifera Archaeplastida HACA
ENSG00000204628 RF00270 Vertebrates Opisthokonts CD No evidence for homology
Pfa_snoR_05 P. falciparum Chromalveolata CD
ENSG00000241343 Fbgn0065055 D. melanogaster Opisthokonts HACA Unrelated classes
RF00202 O. sativa Archaeplastida CD
RF00147 P. trichocarpa Archaeplastida CD
ENSG00000147274* RF00270 Vertebrates Opisthokonts CD Unrelated classes
RF01287 V. vinifera Archaeplastida HACA
ENSG00000149273 RF00067 Vertebrates Opisthokonts CD Unrelated classes
RF01432 O. sativa Archaeplastida HACA
ENSG00000170515 Fbgn0082994 D. melanogaster Opisthokonts HACA Unrelated classes
RF00218 A. thaliana Archaeplastida CD
RF00218 V. vinifera Archaeplastida CD
ENSG00000165502 Fbgn0065055 D. melanogaster Opisthokonts HACA Unrelated classes
RF00202 O. sativa Archaeplastida CD
ENSG00000232055** RF00150 M. domestica Opisthokonts CD No evidence for homology
RF00145 O. sativa Archaeplastida CD
RF00067 O. sativa Archaeplastida CD
ENSG00000215472 RF00151 Vertebrates Opisthokonts CD No evidence for homology
RF00067 P. vivax Chromalveolata CD
Pfa_snoR_21 P. falciparum Chromalveolata CD
RF00067 T. annulata Chromalveolata CD
ENSG00000215472 RF00151 Vertebrates Opisthokonts CD Unrelated classes
Fbgn0086602 D. melanogaster Opisthokonts HACA No evidence for homology
Fbgn0086668 D. melanogaster Opisthokonts HACA
Fbgn0083013 D. melanogaster Opisthokonts HACA
RF001231 A. thaliana Archaeplastida HACA
RF001231 V. vinifera Archaeplastida HACA
RF001231 O. sativa Archaeplastida HACA
ENSG00000145592 RF00577 D. rerio Opisthokonts CD No evidence for homology
RF00200 O. sativa Archaeplastida CD
RF00267 O. sativa Archaeplastida CD
RF00093 O. sativa Archaeplastida CD
ENSG00000109971 RF00016 D. rerio Opisthokonts CD Unrelated classes
No evidence for homology
RF00482 O. sativa Archaeplastida HACA
CL00053 O. sativa Archaeplastida CD
AtsnoR93 A. thaliana Archaeplastida HACA

* Set of 7 human paralogues.

** Set of 2 human paralogues.

Hoeppner and Poole

Hoeppner and Poole BMC Evolutionary Biology 2012 12:183   doi:10.1186/1471-2148-12-183

Open Data