Table 2

Validation of bHLH classified methods
Kingdom BestHit Decision SWDA CVA
BLAST Tree pah pss ms cc ec all pah pss ms cc ec all
1302
Plant 95.5 95.6 96.5 90.7 96.5 92.7 96.8 97.3 97.9 91.5 97.0 92.1 97.7 100
Animal 98.6 95.8 94.2 94.0 91.1 93.4 94.8 97.2 95.7 94.3 92.0 94.3 96.0 99.7
Fungal 98.0 94.3 92.9 91.6 90.4 90.6 94.6 95.8 94.0 90.7 90.8 90.7 95.0 99.6
Total 97.2 92.8 91.8 88.1 89.0 88.4 93.1 95.2 93.8 88.2 89.9 88.5 94.4 99.6
Unclassified 37 5 62 60 65 74 65 61 80 80 80 80 80 80
6987
Plant 98.5 94.9 96.6 86.6 95.0 93.4 96.0 97.9 97.5 89.1 96.3 92.8 98.6 99.3
Animal 97.6 81.7 81.4 79.5 79.1 81.9 81.2 89.3 84.0 81.1 81.0 82.7 82.4 95.8
Fungal 97.3 82.7 82.0 84.8 81.6 84.1 82.4 89.2 84.6 85.4 82.3 85.3 82.6 96.1
Total 97.8 76.6 80.0 75.4 77.9 76.7 79.8 88.2 83.1 77.8 79.8 80.4 81.7 95.6
Unclassified 152 37 404 424 447 461 422 395 481 481 481 481 481 481

Note.-The accuracies are reported for several classification models; including, best hit BLAST, the decision tree analysis, SWDAS, and CVAS. The first measurements are based on the 1302 plant, animal, and fungal sequences used in building the models. The second set assesses the models with the 6987 sequence set which were not used in building the models. The number of sequences that were unable to be classified (Unclassified) for each model are also provided.

Sailsbery and Dean

Sailsbery and Dean BMC Evolutionary Biology 2012 12:154   doi:10.1186/1471-2148-12-154

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