Table 4

Differentially methylated CpG units between humans and rhesus macaques
DMR ID Human CpGunita,c Rhesus CpGunitb,c H1d H2d H3d M1d M2d M3d Differences P valuee Corrected P valuef
8 16 NA 13 14 0.26 0.24 0.25 0.73 0.72 0.73 −0.48 2.3E-07 7.9E-05
8 15 12 0.17 0.12 0.19 0.55 0.58 0.49 −0.38 3.5E-04 8.6E-03
13 NA 4 5 13 12 NA 0.41 NA 0.41 0.17 0.12 0.14 0.27 7.5E-04 1.3E-02
13 14 15 16 NA 1 NA 0.49 NA 0.57 0.29 0.3 0.28 0.24 4.4E-03 4.0E-02
13 1 2 15 14 0.37 0.44 0.48 0.17 0.17 0.02 0.32 6.1E-03 5.0E-02
22 7 8 9 10 7 8 9 10 0.23 0.23 0.12 0.43 0.48 0.41 −0.25 4.3E-03 4.0E-02
51 17 18 19 16 17 18 0.07 0.02 0.05 NA 0.27 0.3 −0.24 1.6E-03 2.2E-02
57 9 NA 10 11 8 9 10 NA 0.11 0.13 0.08 0.67 NA 0.66 −0.56 8.8E-05 5.0E-03
57 29 NA 25 26 0 0 0 0.18 NA 0.25 −0.22 3.7E-03 3.8E-02
75 NA 1 1 2 0.76 0.75 0.8 1.00 1.00 1.00 −0.23 1.1E-04 5.1E-03
76 26 27 NA 1 1.00 1.00 1.00 0.62 0.59 0.69 0.37 2.4E-04 7.3E-03
103 9 9 0.01 0.03 0.03 0.77 0.69 0.6 −0.66 1.8E-04 6.5E-03
103 19 19 0.38 0.33 0.38 0.97 0.91 0.81 −0.53 4.2E-04 9.7E-03
103 4 3 0.14 0.07 0.13 1.00 0.81 0.75 −0.74 7.0E-04 1.3E-02
103 10 11 12 NA 10 11 NA 12 0.21 0.22 0.21 0.99 0.74 0.76 −0.62 1.5E-03 2.1E-02
103 5 NA 6 NA 4 5 NA 6 0.05 0.04 0.06 0.96 NA 0.74 −0.81 2.3E-03 2.6E-02
103 24 25 0.24 0.26 0.31 0.73 0.98 0.71 −0.54 3.9E-03 3.9E-02
122 3 4 5 NA 5 NA 0.87 0.77 0.87 0.26 0.26 0.24 0.58 6.8E-05 5.0E-03
127 18 19 NA 18 19 20 0.11 0.04 0.10 0.28 0.3 0.30 −0.21 7.8E-04 1.3E-02
131 43 44 31 32 0.21 0.24 0.27 0 0.03 0.01 0.23 3.1E-04 7.9E-03
139 15 16 NA 17 18 19 8 9 10 NA 11 NA 0.13 0.21 0.17 0.36 0.39 0.41 −0.22 1.4E-03 2.0E-02
141 45 46 47 43 NA 44 0.25 0.20 0.20 0.02 0.01 0.01 0.21 2.9E-04 7.9E-03
143 NA 3 NA 4 NA 5 0.30 0.29 0.35 1.00 1.00 0.99 −0.68 3.5E-06 7.9E-04
143 7 9 0.27 0.22 0.25 0.96 0.86 0.84 −0.64 8.8E-05 5.0E-03
143 5 7 0.29 0.27 0.33 0.85 0.75 0.80 −0.50 1.2E-04 5.1E-03

athe CpG sites which constitute the CpG unit of human.

bthe CpG sites which constitute the CpG unit of rhesus macaque.

cthe orthologous CpG sites between human CpG units and rhesus macaque CpG units are in the same order; NA means no CpG site in this species but a CpG site in the counterpart species at the orthologous site.

dNA means not available.

ethe P values were obtained by two-sided t-test. Corrected P value.

fthe P value that corrected by Benjamini FDR.

Wang et al.

Wang et al. BMC Evolutionary Biology 2012 12:144   doi:10.1186/1471-2148-12-144

Open Data