Figure 3.

Trends in bootstrap support values and topologies for likelihood analyses of alignment partitions. For OV-based analyses, the following are shown: a) Distributions of bootstrap support values for all nodes. Circles represent median bootstrap support for each A_n partition size. b) Distribution of branch score metric (triangles) and partition metric (circles) values for tests of topological congruence between A_n and corresponding B_n data partitions. Filled data points correspond to A_n partitions sizes falling between final decrease of branch score metric values and start of decreases in overall bootstrap support values for A_n partitions. Partition metric values shown are 0.1× actual value in order to fit on same scale with branch score metric values.