Table 1

List of species, other than human, identified by BLAST in wgs and htgs databases

Alpha

repeat

HS3

HS1,2

HS4


MI

QC

MI

QC

MI

QC

MI

QC

MI

QC

Gorilla gorilla - Gorilla (P)

94%

100%

93%

100%

97%

100%

94%

78%

98%

100%

Pongo abelii - Orangutan (P)

94%

62%

88%

99%

92%

100%

92%

100%

95%

99%

Pan troglodytes - Chimpanzee (P)

93%

87%

87%

100%

99%

100%

95%

100%

-

-

Macaca mulatta - Macaque (P)

89%

100%

82%

100%

93%

100%

90%

80%

-

-

Felis catus - Cat

88%

75%

76%

100%

77%

66%

76%

46%

69%

100%

Callithrix jacchus - Marmoset (P)

85%

99%

67%

99%

85%

100%

89%

78%

-

-

Sorex araneus - European shrew

81%

71%

70%

52%

-

-

76%

26%

-

-

Otolemur garnettii - Galago (P)

79%

36%

74%

99%

-

-

-

-

-

-

Tarsius syrichta - Tarsier (P)

76%

43%

64%

92%

82%

88%

-

-

-

-

Echinops telfairi - Madagascar hedgehog

75%

42%

-

-

67%

77%

81%

30%

-

-

Choloepus hoffmanni - Sloth

74%

30%

-

-

-

-

-

-

-

-

Tursiops truncatus - Dolphin

73%

98%

76%

99%

77%

84%

73%

45%

-

-

Canis familiaris - Dog

72%

99%

75%

99%

74%

90%

76%

47%

79%

44%

Microcebus murinus - Lemur (P)

72%

57%

67%

98%

81%

84%

-

-

-

-

Ovis aries - Sheep

72%

43%

-

-

76%

75%

77%

36%

-

-

Ailuropoda melanoleuca - Panda

71%

99%

79%

99%

75%

82%

75%

86%

70%

83%

Pteropus vampyrus - Large flying fox

71%

99%

67%

61%

78%

84%

-

-

66%

88%

Bos taurus - Cattle

70%

79%

82%

99%

77%

84%

-

-

-

-

Ornithorhynchus anatinus - Platypus

70%

31%

66%

58%

-

-

-

-

-

-

Myotis lucifugus - Little brown bat

70%

21%

69%

86%

-

-

69%

43%

-

-

Equus caballus - Horse

69%

78%

78%

99%

80%

77%

-

-

-

-

Spermophilus tridecemlineatus - Squirrel

69%

30%

66%

71%

-

-

-

-

-

-

Oryctolagus cuniculus - Rabbit

68%

99%

76%

99%

66%

79%

66%

52%

70%

89%

Rattus norvegicus - Brown rat

68%

99%

65%

98%

78%

84%

76%

34%

75%

49%

Mus musculus - Mouse

67%

98%

70%

99%

72%

76%

77%

40%

74%

46%

Procavia capensis - Hyrax

67%

97%

-

-

-

-

-

-

75%

50%

Tupaia belangeri - Tree shrew

67%

26%

64%

99%

-

-

-

-

-

-

Macropus eugenii - Wallaby

66%

28%

-

-

-

-

-

-

-

-

Ochotona princeps - Pika

65%

99%

71%

99%

-

-

-

-

-

-

Cavia porcellus - Guinea pig

65%

98%

67%

99%

75%

82%

74%

42%

-

-

Monodelphis domestica - Opossum

65%

45%

65%

80%

-

-

-

-

-

-

Erinaceus europaeus - European hedgehog

63%

64%

62%

91%

72%

68%

-

-

-

-

Dasypus novemcinctus - Armadillo

62%

29%

71%

99%

-

-

-

-

-

-

Dipodomys ordii - Kangaroo rat

61%

34%

65%

99%

-

-

-

-

-

-

Loxodonta africana - Elephant

61%

29%

64%

98%

-

-

-

-

-

-

Total

35

30

21

17

10


MI, Max Identity (i.e. the higher value among the identity values of the BLAST output); QC, Query Coverage (i.e. portion of the query sequence that was recognized by some subject sequence of that species); P, Primate. Alpha, [GenBank:NC_000014:106053245-106054732] (1488 bp); repeat, [GenBank:NC_000014:106048991-106049802] (812 bp); HS3, [GenBank:NC_000014:106048351-106048676] (326 bp); HS1,2, [GenBank:NC_000014:106041545-106042009] (465 bp); HS4, [GenBank:NC_000014:106032614-106032974] (361 bp).

D'Addabbo et al. BMC Evolutionary Biology 2011 11:71   doi:10.1186/1471-2148-11-71

Open Data