Table 1

Support dependency on the model assumptions

Model

Type of Data

Statistical Support

PP

SH

BS


GTRnt + Γ4 (+I)

0.999

0.93

0.821

CAT +GTRnt + Γ4

Nucleotide

0.995

*

*

GTRnt +BP + Γ 4

0.949

*

*


JTT + Γ4 (+I)

0.919

0.46

0.416

GTRaa + Γ4

0.978

*

*

CAT + Γ4

Amino Acid

0.629

*

*

CAT +JTT + Γ4

0.802

*

*

CAT +BP + Γ4

0.747

*

*


Support dependency of the great ape and rodent parasites monophyly on assumptions of various probabilistic models of substitution (GTRnt, GTRaa and JTT: single matrix model, CAT: site heterogeneous mixture model, BP : time heterogeneous model). Rates across site model components are defined as + Γ4 + I under maximum-likelihood (ML) and as + Γ4 under Bayesian inference (BI) methods. PP: Posterior probability (BI), SH: Shimodaira-Hasegawa-like support (ML), and BS: bootstrap support (ML). "*": not applicable.

Blanquart and Gascuel BMC Evolutionary Biology 2011 11:70   doi:10.1186/1471-2148-11-70

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