Unrooted neighbour-joining tree between sockeye salmon populations. Based on Cavalli-Sforza & Edwards  chord distances for 38 nuclear ('No Outliers') SNPs. Segmented lines indicate the Alagnak (blue) and Kvichak (red) subdrainages; squares represent lakes from Alagnak (Battle: black; Kukaklek: grey; Nonvianuk: empty squares), whereas circles represent lakes from Kvichak (Clark: black; Sixmile: grey; Iliamna: empty). Numbers on branches represent percentages (only >50% are shown) of bootstrap support after generating 1000 resampled trees. R2 depicts how well branch length and the variation of the distance matrix are correlated.
Gomez-Uchida et al. BMC Evolutionary Biology 2011 11:48 doi:10.1186/1471-2148-11-48