Table 2

Genetic differentiation within the 16 clusters

Cluster

species included in cluster

sampling units

n

Ht

Hw

Hb

Fst

species included in the clusters/new arrangements


1

rap (15)

among accessions

15

0.2679

0.2776

-0.0098

-0.0365


2

ver (19), mcp (2) spec 262, spec 287

among accessions

23

0.2515

0.2448

0.0068

0.0272


among species

4

0.2765

0.2063

0.0702

0.2377


among new groups

3

0.2445

0.1551

0.0894

0.3598


among new groups

2

0.2859

0.1471

0.1388

0.4675

(ver, mcp) (spec 262, spec287)


3

ktz(7), mag (2), oka (8), rch (1), spg (1), vnt (4)

among accessions

22

0.2875

0.2704

0.0171

0.0592


among species

6

0.2438

0.2113

0.0325

0.1285


among new groups

3

0.2

0.1527

0.0473

0.2319

(ktz, mag, rch) (oka, vnt) spg


among new groups

2

0.1686

0.1305

0.0381

0.2231


4

gig(18), mag (2), mcd (6) spg (1)

among accessions

27

0.2556

0.2457

0.0098

0.0384


among species

4

0.1973

0.1777

0.0195

0.0984


among new groups

3

0.213

0.1898

0.0231

0.1059

(gig, mcd) mag spg


among new groups

2

0.3341

0.3064

0.0277

0.0639


5

med (6), snd (3), wbr (2) vio (1)

among accessions

13

0.303

0.2864

0.0166

0.0548


among species

4

0.2594

0.2069

0.0525

0.2023


among new groups

3

0.2626

0.1949

0.0678

0.2559


among new groups

2

0.2926

0.2055

0.0871

0.2893

(snd, wbr, med) vio


6

cmm (12), mlm (7)

among accessions

19

0.3357

0.3535

-0.0177

-0.0528


among species

2

0.1763

0.1395

0.0368

0.2084

cmm mlm


7

abz (4), acp (1), acs (1), agu (1), chn (3), chv (1), dcm (4), hcr (1), imt (3), mcq(4), ncd (2), scb (1) vio (1) spec 205, spec 310, spec 6

among accessions

30

0.3016

0.2449

0.0567

0.1878


among species

16

0.2754

0.1988

0.0766

0.2777


among new groups

7

0.2448

0.143

0.1019

0.4175


among new groups

6

0.245

0.1405

0.1045

0.4276


among new groups

5

0.2513

0.1419

0.1094

0.4357

(acs, agu, hcr, acp, scb, chn, mcq, imt, spec 205, spec 310, spec 6) (dcm, chv) ncd, abz, vio


among new groups

4

0.25

0.1418

0.1082

0.4333


8

hcb(4), sgr (3), vio (1)

among accessions

9

0.2813

0.2319

0.0494

0.1758


among species

3

0.2774

0.1919

0.0856

0.3043

hcb, sgr, vio


among new groups

2

0.3053

0.2128

0.0925

0.2948


9

bal(3), han (7), vrn (16), spg (1)

among accessions

27

0.2659

0.2434

0.0226

0.0847


among species

4

0.2092

0.1687

0.0405

0.1904


among new groups

3

0.2133

0.1665

0.0468

0.2114


among new groups

2

0.1662

0.1251

0.0411

0.2459

(bal, vrn, spg) han


10

abn (1), ach(1), amb (3), aml(1), amy (2), aym (1), buk (6), can (7), chi (1), cnd (3), cop (5), hro (1), lmb (1), mlt (11), mrn (5), orp (5), pam (4), sou (1), scr (1), sub (1) vlr (2) vrg (1) spec 998, spec 184, spec 292, spec 533, spec 726, spec 796, spec 394, spec 933

among accessions

72

0.3095

0.2881

0.0213

0.069


among species

31

0.2828

0.2529

0.03

0.1058


among new groups

16

0.2598

0.2171

0.0427

0.1645


among new groups

7

0.2574

0.2045

0.0529

0.2066


among new groups

5

0.2796

0.2195

0.0601

0.2143


among new groups

4

0.2996

0.2336

0.066

0.2194

(abn, ach, amb, aml, amy, aym, buk, can, chi, cnd, cop, hro, lmb, mlt, mrn, orp, pam, sou, scr, sub, vlr, vrg, spec 998, spec 184, mtp, spec 292, spec 533, spec 726, spec 796) ach, spec933, spec394


among new groups

3

0.2748

0.2142

0.0606

0.2189


11

lgl (2), mga (4), sct (6), tor (7)

among accessions

19

0.3231

0.31

0.0131

0.0401


among species

4

0.2285

0.1885

0.04

0.1743


among new groups

3

0.2421

0.1968

0.0453

0.1858

(mga, tor) lgl, sct


among new groups

2

0.2269

0.1877

0.0391

0.1704


12

arz (5), chc (12), rzl (1), stl(1), yun (3), tar (4), vrn (1) spec 210, spec211, spec329, grl(1)

among accessions

31

0.2927

0.2716

0.0211

0.072


among species

11

0.2784

0.2506

0.0278

0.0991


among new groups

6

0.2236

0.1867

0.0369

0.1646


among new groups

4

0.22

0.178

0.042

0.1886


among new groups

3

0.2317

0.1853

0.0465

0.1949

(chc, rzl, stl, grl, spec210, spec211, spec329, yun, arz) vrn, arz


among new groups

2

0.1772

0.1445

0.0326

0.1831


13

dds (1), grl (15), hps (3), ifd (2), inm (8), ptr (3), vid (3), nrs (2), spg (3), haw (7)

among accessions

47

0.3045

0.2885

0.016

0.0526


among species

10

0.2252

0.18

0.0452

0.2006


among new groups

5

0.2135

0.1582

0.0553

0.259

(grl, dds, hps, ifd, inm, ptr) vid, haw, spg, nrs


among new groups

4

0.2066

0.1545

0.0521

0.2522


14

chc(3), dds((3), tar(27), aln(4), ber(23), gnd(5), stl(1), spec 255, spec 601

among accessions

69

0.2671

0.2518

0.0153

0.0573


among species

9

0.2092

0.1823

0.027

0.1276


among new groups

6

0.1726

0.148

0.0246

0.1417


among new groups

5

0.1766

0.1502

0.0264

0.1479


among new groups

4

0.157

0.1327

0.0244

0.1549

(stl, spec 255, spec 601, yun, chc, dds, tar) aln ber gnd


among new groups

3

0.1616

0.1383

0.0233

0.1439


15

oka (7)

among accessions

7

0.261

0.2602

0.0007

0.0029


16

grl (18), hps(2), aln(3), arp(2), dds(1), hmp(1) ptr(5), scr(8), lph(6), ugt(4), vrg(4), opl(17), ifd(5), vid(5), gnd(1), vrn(1), nrs(2), spg(1), spl(13), brc(10), ast(5), blv(3), hdm(6), avl(3) spec352, spec43, spec123, spec165, spec891, spec381, spec649

among accessions

134

0.3169

0.302

0.015

0.0473


among species

31

0.2456

0.215

0.0306

0.1245


among new groups

14

0.217

0.1823

0.0347

0.1597


among new groups

7

0.214

0.1742

0.0399

0.1855


among new groups

6

0.2166

0.1749

0.0418

0.1913


among new groups

5

0.224

0.1799

0.0442

0.1952

(grl, hps, aln, arp, dds, hmp ptr, scr, lph, ugt, vrg, opl, ifd, vid, gnd, vrn, nrs, spg, spl, brc, spec416, spec352, spec43, spec123, spec165, spec891, spec381), (ast, blv), hdm, avl, spec649


among new groups

4

0.2372

0.1932

0.0439

0.1831


n = number of sampled accessions; Ht = total diversity; Hw = within population diversity; Hb = between population diversity; Fst = Wright's fixation index, differentiation among populations. The explanation of the species code can be found in table 3.

Jacobs et al. BMC Evolutionary Biology 2011 11:42   doi:10.1186/1471-2148-11-42

Open Data