Table 1

Species and DNA sequences examined in this study.

No.

Species

Voucher

28S rDNA

histone H3

ITS rDNA

mt COI

mt IGR


1

Acanthastrea echinata (XX; Mussidae)

S031

HQ203399

HQ203520

HQ203308

EU371658

2

Barabattoia amicorum

S047

HQ203400

HQ203521

HQ203309

FJ345412

FJ345480

3

Caulastraea echinulata

S041

HQ203401

HQ203522

FJ345414

FJ345496

4

Caulastraea furcata

P108

HQ203402

HQ203523

HQ203248

HQ203639

5

Caulastraea tumida

G61875

HQ203403

HQ203524

HQ203310

HQ203249

HQ203640

6

Cyphastrea chalcidicum

G61902

HQ203404

HQ203525

HQ203311

HQ203250

7

Cyphastrea chalcidicum

S103

HQ203405

HQ203526

HQ203312

FJ345415

8

Cyphastrea microphthalma

S069

HQ203406

HQ203527

FJ345416

9

Cyphastrea serailia

G61889

HQ203407

HQ203528

HQ203313

HQ203251

10

Cyphastrea serailia

S024

HQ203408

HQ203529

HQ203314

EU371659

11

Cyphastrea serailia

P120

HQ203409

HQ203530

HQ203252

12

Diploastrea heliopora (XV)

S048

HQ203410

HQ203531

HQ203315

EU371660

13

Echinopora gemmacea

S120

HQ203411

HQ203532

HQ203316

FJ345418

FJ345457

14

Echinopora horrida

G61907

HQ203412

HQ203533

HQ203317

HQ203253

HQ203641

15

Echinopora lamellosa

S109

HQ203413

HQ203534

HQ203318

FJ345419

FJ345458

16

Echinopora mammiformis

G61884

HQ203414

HQ203535

HQ203319

HQ203254

HQ203642

17

Echinopora pacificus

S110

HQ203415

HQ203536

HQ203320

FJ345420

FJ345459

18

Favia danae

G61885

HQ203416

HQ203537

HQ203321

HQ203643

19

Favia danae

S092

HQ203417

HQ203538

EU371663

FJ345476

20

Favia favus

G61880

HQ203418

HQ203539

HQ203322

HQ203255

HQ203644

21

Favia favus

G61915

HQ203419

HQ203540

HQ203323

HQ203256

HQ203645

22

Favia favus

S003

HQ203420

HQ203541

HQ203324

EU371710

FJ345511

23

Favia favus

S025

HQ203421

HQ203542

EU371664

FJ345465

24

Favia favus

S040

HQ203422

HQ203543

HQ203325

EU371665

FJ345466

25

Favia favus

P105

HQ203423

HQ203544

HQ203257

HQ203646

26

Favia fragum (XXI)

AF549222

AB117222

27

Favia cf. laxa

S013

HQ203424

HQ203545

EU371707

FJ345508

28

Favia cf. laxa

S014

HQ203425

HQ203546

HQ203326

EU371708

FJ345509

29

Favia lizardensis

G61872

HQ203426

HQ203547

HQ203327

HQ203647

30

Favia lizardensis

S072

HQ203427

HQ203548

HQ203328

EU371668

FJ345484

31

Favia lizardensis

P136

HQ203428

HQ203549

HQ203648

32

Favia cf. maritima

G61912

HQ203429

HQ203550

HQ203329

HQ203258

HQ203649

33

Favia matthaii

G61881

HQ203430

HQ203551

HQ203330

34

Favia matthaii

G61883

HQ203431

HQ203552

HQ203331

HQ203259

HQ203650

35

Favia matthaii

S005

HQ203432

HQ203553

HQ203332

EU371669

FJ345471

36

Favia matthaii

S029

HQ203433

HQ203554

HQ203333

EU371671

FJ345473

37

Favia maxima

S052

HQ203434

HQ203555

HQ203334

EU371674

38

Favia maxima

P142

HQ203435

HQ203556

HQ203260

HQ203651

39

Favia cf. maxima

P134

HQ203436

HQ203557

HQ203335

HQ203261

HQ203652

40

Favia pallida

G61898

HQ203437

HQ203558

HQ203336

HQ203653

41

Favia pallida

S036

HQ203438

HQ203559

HQ203337

EU371675

FJ345482

42

Favia rosaria

G61911

HQ203439

HQ203560

HQ203338

HQ203262

HQ203654

43

Favia rotumana

S068

HQ203440

HQ203561

HQ203339

FJ345427

FJ345485

44

Favia rotundata

G61874

HQ203441

HQ203562

HQ203340

HQ203263

45

Favia rotundata

P132

HQ203442

HQ203563

46

Favia speciosa

S001

HQ203443

HQ203564

HQ203341

EU371677

FJ345505

47

Favia speciosa

S026

HQ203444

HQ203565

EU371680

FJ345506

48

Favia speciosa

P103

HQ203445

HQ203566

HQ203342

HQ203264

HQ203655

49

Favia stelligera

P141

HQ203446

HQ203567

HQ203343

HQ203265

HQ203656

50

Favia truncatus

G61897

HQ203447

HQ203568

HQ203344

HQ203266

HQ203657

51

Favites abdita

S002

HQ203448

HQ203569

HQ203345

HQ203267

52

Favites chinensis

S084

HQ203449

HQ203570

HQ203346

HQ203268

53

Favites complanata

S007

HQ203450

HQ203571

HQ203347

EU371689

54

Favites flexuosa

P116

HQ203451

HQ203572

HQ203348

HQ203269

55

Favites halicora

S115

HQ203452

HQ203573

HQ203349

HQ203270

56

Favites paraflexuosa

S100

HQ203453

HQ203574

HQ203350

EU371694

FJ345521

57

Favites pentagona

S086

HQ203454

HQ203575

HQ203351

EU371695

58

Favites pentagona

P111

HQ203455

HQ203576

HQ203271

59

Favites russelli

G61895

HQ203456

HQ203577

HQ203352

HQ203272

HQ203658

60

Favites stylifera

P128

HQ203457

HQ203578

HQ203353

HQ203273

HQ203659

61

Goniastrea aspera

S107

HQ203458

HQ203579

HQ203354

FJ345430

FJ345487

62

Goniastrea australensis

G61876

HQ203459

HQ203580

HQ203355

HQ203274

HQ203660

63

Goniastrea australensis

S088

HQ203460

HQ203581

HQ203356

FJ345431

FJ345490

64

Goniastrea australensis

S098

HQ203461

HQ203582

EU371696

FJ345491

65

Goniastrea edwardsi

S045

HQ203462

HQ203583

HQ203357

EU371697

FJ345492

66

Goniastrea edwardsi

S117

HQ203463

HQ203584

FJ345432

FJ345493

67

Goniastrea favulus

G61877

HQ203464

HQ203585

HQ203358

HQ203661

68

Goniastrea favulus

S022

HQ203465

HQ203586

EU371698

FJ345494

69

Goniastrea palauensis

S021

HQ203466

HQ203587

HQ203359

EU371699

FJ345488

70

Goniastrea pectinata

G61879

HQ203467

HQ203588

HQ203360

HQ203662

71

Goniastrea pectinata

S043

HQ203468

HQ203589

FJ345434

FJ345489

72

Goniastrea pectinata

P110

HQ203469

HQ203590

HQ203663

73

Goniastrea retiformis

S083

HQ203470

HQ203591

HQ203361

EU371700

FJ345527

74

Goniastrea retiformis

P119

HQ203471

HQ203592

HQ203275

HQ203664

75

Hydnophora exesa (Merulinidae)

P127

HQ203472

HQ203593

HQ203362

HQ203276

HQ203665

76

Hydnophora microconos (Merulinidae)

P121

HQ203473

HQ203594

HQ203363

HQ203277

HQ203666

77

Hydnophora pilosa (Merulinidae)

P138

HQ203474

HQ203595

HQ203364

HQ203278

HQ203667

78

Leptoria irregularis

P133

HQ203475

HQ203596

HQ203279

HQ203668

79

Leptoria phrygia

S081

HQ203476

HQ203597

HQ203365

EU371705

FJ345529

80

Lobophyllia corymbosa (XIX; Mussidae)

AF549237

AB117241

81

Merulina ampliata (Merulinidae)

P106

HQ203477

HQ203598

HQ203280

HQ203669

82

Merulina scabricula (Merulinidae)

P114

HQ203478

HQ203599

HQ203366

HQ203281

HQ203670

83

Montastraea annularis

A622

HQ203479

HQ203600

HQ203367

HQ203282

84

Montastraea cf. annuligera

P117

HQ203481

HQ203602

HQ203369

HQ203671

85

Montastraea cavernosa (XVI)

A005

HQ203480

HQ203601

HQ203368

HQ203283

86

Montastraea colemani

P118

HQ203482

HQ203603

HQ203284

87

Montastraea curta

G61882

HQ203483

HQ203604

HQ203370

HQ203285

88

Montastraea curta

P122

HQ203484

HQ203605

HQ203286

89

Montastraea magnistellata

G61896

HQ203485

HQ203606

HQ203371

HQ203287

90

Montastraea magnistellata

P109

HQ203486

HQ203607

HQ203288

91

Montastraea multipunctata

P131

HQ203487

HQ203608

HQ203372

HQ203289

92

Montastraea salebrosa

P139

HQ203488

HQ203609

HQ203373

HQ203290

HQ203672

93

Montastraea valenciennesi

G61904

HQ203489

HQ203610

HQ203291

HQ203673

94

Montastraea valenciennesi

S006

HQ203490

HQ203611

HQ203374

EU371713

FJ345514

95

Montastraea valenciennesi

S008

HQ203491

HQ203612

EU371714

FJ345515

96

Montastraea valenciennesi

P102

HQ203492

HQ203613

HQ203375

HQ203292

97

Moseleya latistellata

G61909

HQ203493

HQ203614

HQ203376

HQ203293

HQ203674

98

Mussa angulosa (XXI; Mussidae)

AF549236

AB441402

NC_008163

99

Mycedium elephantotus (Pectiniidae)

S121

HQ203494

HQ203615

HQ203377

HQ203294

HQ203675

100

Mycedium robokaki (Pectiniidae)

S126

HQ203495

HQ203616

HQ203378

HQ203295

HQ203676

101

Oulophyllia bennettae

G61873

HQ203496

HQ203617

HQ203296

HQ203677

102

Oulophyllia bennettae

S033

HQ203497

HQ203618

HQ203379

FJ345436

FJ345497

103

Oulophyllia aff. bennettae

P140

HQ203498

HQ203619

HQ203380

HQ203297

104

Oulophyllia crispa

S055

HQ203499

HQ203620

HQ203381

EU371721

FJ345500

105

Pectinia alcicornis (Pectiniidae)

P124

HQ203500

HQ203621

HQ203382

HQ203298

HQ203678

106

Pectinia ayleni (Pectiniidae)

S122

HQ203501

HQ203622

HQ203383

HQ203299

HQ203679

107

Pectinia lactuca (Pectiniidae)

P115

HQ203502

HQ203623

HQ203384

HQ203300

HQ203680

108

Pectinia paeonia (Pectiniidae)

P126

HQ203503

HQ203624

HQ203385

HQ203301

HQ203681

109

Platygyra acuta

P123

HQ203504

HQ203625

HQ203386

HQ203682

110

Platygyra contorta

P112

HQ203505

HQ203626

HQ203387

HQ203683

111

Platygyra daedalea

G61878

HQ203506

HQ203627

HQ203684

112

Platygyra daedalea

S116

HQ203507

HQ203628

HQ203388

FJ345440

FJ345530

113

Platygyra lamellina

G61887

HQ203508

HQ203629

HQ203389

HQ203302

HQ203685

114

Platygyra lamellina

S114

HQ203509

HQ203630

FJ345441

FJ345531

115

Platygyra pini

G61899

HQ203510

HQ203631

HQ203390

HQ203303

HQ203686

116

Platygyra pini

S035

HQ203511

HQ203632

HQ203391

FJ345443

FJ345535

117

Platygyra ryukyuensis

P101

HQ203512

HQ203633

HQ203392

HQ203304

HQ203687

118

Platygyra sinensis

S118

HQ203513

HQ203634

HQ203393

FJ345442

FJ345534

119

Platygyra sinensis

P130

HQ203514

HQ203635

HQ203305

HQ203688

120

Platygyra cf. verweyi

S037

HQ203515

HQ203636

HQ203394

EU371722

FJ345532

121

Plesiastrea versipora (XIV)

S127

HQ203397

HQ203518

HQ203307

HQ203246

122

Plesiastrea versipora (XIV)

P137

HQ203398

HQ203519

HQ203247

123

Scapophyllia cylindrica (Merulinidae)

S060

HQ203516

HQ203637

HQ203395

FJ345444

FJ345502

124

Trachyphyllia geoffroyi (Trachyphylliidae)

J001

HQ203517

HQ203638

HQ203396

HQ203306

HQ203689


Unless indicated by roman numerals and/or family names in parentheses, all species belong to clade XVII and Faviidae, respectively. Species placed in a molecular phylogenetic context for the first time are in bold. Specimens with voucher numbers starting with 'G' are from Great Barrier Reef (Australia), 'S' from Singapore, 'J' from Japan, 'P' from the Philippines, and 'A' from the Atlantic. GenBank accession numbers are displayed for each molecular marker.

Huang et al. BMC Evolutionary Biology 2011 11:37   doi:10.1186/1471-2148-11-37

Open Data