Table 1

Estimated substitution rates per gene obtained with BEAST based on fossil and biogeographic calibration points

Gene

Mean Rate

ucld.mean

ucld.stdev

Coefficient Variance

Covariance


cox1

0.0125

(0.0089-0.0165)

0.0199

(0.0136-0.0270)

0.6668

(0.4780-0.8728)

0.7087

(0.4823-0.9635)

0.0254

(-0.2254-0.2960)

nad1

0.0177

(0.0115-0.0240)

0.0258

(0.0163-0.0362)

0.6390

(0.4395-0.8792)

0.6400

(0.4088-0.8978)

0.0003

(-0.2474-0.2699)

12S

0.0087

(0.0057-0.0119)

0.0128

(0.0080-0.0181)

0.6950

(0.4080-1.0218)

0.7272

(0.3649-1.1102)

-0.0115

(-0.2637-0.2773)

16-L1

0.0063

(0.0046-0.0082)

0.0091

(0.0063-0.0124)

0.5731

(0.4032-0.7500)

0.5576

(0.3818-0.7309)

-0.0183

(-0.02596-0.2543)

h3

0.00108

(0.0006-0.0016)

0.0013

(0.0007-0.0019)

0.6450

(0.3241-1.0006)

0.6332

(0.2918-0.9781)

-0.0125

(-0.2216-0.2089)

28S

0.0006

(0.0003-0.0008)

0.0011

(0.0005-0.0019)

1.2490

(0.8895-1.6582)

1.4518

(0.9805-1.9531)

0.1892

(-0.0572-0.4451)


Estimations obtained under uncorrelated lognormal relaxed clock. Lower and upper bounds of the 95% HPD are indicated between brackets. Mean Rate: number of substitutions per site across the tree divided by the tree length. Ucld.mean: mean of the branches rates.

Bidegaray-Batista and Arnedo BMC Evolutionary Biology 2011 11:317   doi:10.1186/1471-2148-11-317

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