Table 2

Positively-selected codon positions in the Lagomorpha TRIM5α deduced protein sequences

Codona

Normalized E [dN-dS]

Posterior

Probability

Bayes

Factor

Region

Orcub

Leeu

Legr

Syba

Ocpr


3

0.30

1.00

795

-

S0

S0

S0

    A
0

S0

148

0.29

0.99

224

CC

N0/K+

N0

N0

H0/+

K+

196

0.29

0.99

179

CC

E-

    G
0

    G
0

E-

    M
0

279

0.30

1.00

1913

-

    I
0

T0

    I
0

    I
0

    A
0

288

0.29

0.99

178

-

    M
0

    V
0

    V
0

    M
0

N0

327

0.30

1.00

6611

v1

H0/+/Q0

Q0

Q0

K+

    F
0

329

0.30

1.00

578

v1

R+

H0/+

H0/+

Q0

    G
0

330

0.30

1.00

35572

v1

    L
0

    G
0

    G
0

    P
0

N0

331

0.30

0.99

405

v1

N0

S0

S0

S0

    V
0

332

0.30

1.00

33711

v1

    L
0

    L
0

    L
0

    F
0

S0

334

0.30

1.00

5055

v1

S0

    L
0

    L
0

    P
0

    G
0

336

0.30

0.99

294

v1

S0

K+

K+

N0

K+

341

0.30

1.00

483

v1

    F
0

    C
0

    C
0

R+

    L
0

342

0.30

1.00

574

v1

R+

Q0

Q0

Q0

T0

347

0.30

0.99

320

v1

T0

    I
0

    I
0

T0

    L
0

348

0.30

1.00

691

v1

R+

K+

K+

    G
0

T0

391

0.30

1.00

3822

v2

T0

    I
0

    I
0

T0

Q0

396

0.30

0.99

438

v2

Y0

Y0

Y0

    F
0

    P
0

399

0.30

0.99

368

v2

    V
0

    F
0

    F
0

    A
0

    G
0

415

0.28

0.98

134

v3

    I
0

N0

N0

N0

    G
0

434

0.30

0.99

432

v3

    P
0

    P
0

    P
0

    L
0

S0

457

0.29

0.99

217

-

K+

T0

T0

K+

    V
0

464

0.30

0.99

416

-

S0

S0

S0

    A
0

S0

469

0.30

0.99

418

-

S0

    A
0

    A
0

S0

S0

480

0.30

1.00

639

-

H0/+

Q0

Q0

Q0

T0


European rabbit (Orcu), European brown hare (Leeu), Iberian hare (Legr), brush rabbit (Syba) and American pika (Ocpr).

a Codon positions are numbered according to the alignment in Figure 1.

b Single amino acid = same for both Orcu subspecies, Oryctolagus cuniculus cuniculus (Orcucu) and Oryctolagus cuniculus algirus (Orcual); Two amino acids divided by "/" = Orcucu amino acid/Orcual amino acid

Codon physical-chemical properties are also represented: Underlined codon = non-polar amino acid; non-underlined codon = polar amino acid; + = positive amino acid; - = negative amino acid; 0 = neutral amino-acid.

de Matos et al. BMC Evolutionary Biology 2011 11:294   doi:10.1186/1471-2148-11-294

Open Data