www.biomedcentral.com

Table 2
Positively-selected codon positions in the Lagomorpha TRIM5α deduced protein sequences
Codon^a	Normalized E [dN-dS]	Posterior Probability	Bayes Factor	Region	Orcu^b	Leeu	Legr	Syba	Ocpr

3	0.30	1.00	795	-	S⁰	S⁰	S⁰	A⁰	S⁰
148	0.29	0.99	224	CC	N⁰/K⁺	N⁰	N⁰	H^0/+	K⁺
196	0.29	0.99	179	CC	E^-	G⁰	G⁰	E^-	M⁰
279	0.30	1.00	1913	-	I⁰	T⁰	I⁰	I⁰	A⁰
288	0.29	0.99	178	-	M⁰	V⁰	V⁰	M⁰	N⁰
327	0.30	1.00	6611	v1	H^0/+/Q⁰	Q⁰	Q⁰	K⁺	F⁰
329	0.30	1.00	578	v1	R⁺	H^0/+	H^0/+	Q⁰	G⁰
330	0.30	1.00	35572	v1	L⁰	G⁰	G⁰	P⁰	N⁰
331	0.30	0.99	405	v1	N⁰	S⁰	S⁰	S⁰	V⁰
332	0.30	1.00	33711	v1	L⁰	L⁰	L⁰	F⁰	S⁰
334	0.30	1.00	5055	v1	S⁰	L⁰	L⁰	P⁰	G⁰
336	0.30	0.99	294	v1	S⁰	K⁺	K⁺	N⁰	K⁺
341	0.30	1.00	483	v1	F⁰	C⁰	C⁰	R⁺	L⁰
342	0.30	1.00	574	v1	R⁺	Q⁰	Q⁰	Q⁰	T⁰
347	0.30	0.99	320	v1	T⁰	I⁰	I⁰	T⁰	L⁰
348	0.30	1.00	691	v1	R⁺	K⁺	K⁺	G⁰	T⁰
391	0.30	1.00	3822	v2	T⁰	I⁰	I⁰	T⁰	Q⁰
396	0.30	0.99	438	v2	Y⁰	Y⁰	Y⁰	F⁰	P⁰
399	0.30	0.99	368	v2	V⁰	F⁰	F⁰	A⁰	G⁰
415	0.28	0.98	134	v3	I⁰	N⁰	N⁰	N⁰	G⁰
434	0.30	0.99	432	v3	P⁰	P⁰	P⁰	L⁰	S⁰
457	0.29	0.99	217	-	K⁺	T⁰	T⁰	K⁺	V⁰
464	0.30	0.99	416	-	S⁰	S⁰	S⁰	A⁰	S⁰
469	0.30	0.99	418	-	S⁰	A⁰	A⁰	S⁰	S⁰
480	0.30	1.00	639	-	H^0/+	Q⁰	Q⁰	Q⁰	T⁰

European rabbit (Orcu), European brown hare (Leeu), Iberian hare (Legr), brush rabbit (Syba) and American pika (Ocpr). ^aCodon positions are numbered according to the alignment in Figure 1. ^bSingle amino acid = same for both Orcu subspecies, Oryctolagus cuniculus cuniculus (Orcucu) and Oryctolagus cuniculus algirus (Orcual); Two amino acids divided by "/" = Orcucu amino acid/Orcual amino acid Codon physical-chemical properties are also represented: Underlined codon = non-polar amino acid; non-underlined codon = polar amino acid; ⁺= positive amino acid; ^-= negative amino acid; ⁰= neutral amino-acid.
de Matos et al. BMC Evolutionary Biology 2011 11:294 doi:10.1186/1471-2148-11-294

Table 2