Table 3

Partition schemes used in ML analyses of combined dataset 1

scheme

#a

partitionsb

ln L

AIC/AICc

BIC

parameters

topologyc


1

1

no partition

-94660.30

189554.6

190374.7

117

A

2

4

codon_1, codon_2,

codon_3, 12S16S

-90704.00

181696

182705.4

144

A

3

5

nuclear_12,

nuclear_3, Cytb_12,

Cytb_3, 12S16S

-86566.50

173439

174511.4

153

B

4

6

RAG1, RAG2, vWF,

BRCA1, Cytb,

12S16S

-90465.01

181254

182389.6

162

C

5

7

nuclear_1,

nuclear_2,

nuclear_3, Cytb_1,

Cytb_2, Cytb_3,

12S16S

-86362.20

173066.3

174264.9

171

D

6

11

RAG1_12, RAG1_3,

RAG2_12, RAG2_3,

vWF_12, vWF_3,

BRCA1_12,

BRCA1_3, Cytb_12,

Cytb_3, 12S16S

-85935.75

172296.3

173736.5

207

B

7

16

each codon position

for each coding

gene, 12S16S

-85683.00

171887.5

173637.8

252

E


a Number of partitions. b Numbers after underscore represent codon position. c Topologies are illustrated in the Additional file 5.

Almeida et al. BMC Evolutionary Biology 2011 11:281   doi:10.1186/1471-2148-11-281

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