Table 1

Transcription factor binding sites from our wiki track annotation [5] of the regulatory regions investigated here

Transcription factor

JASPAR

Transfac

Region


Sp1

+

+

CR1

Sp3

-

+

CR1

TR2

-

-

CR1

Nr2c1

-

-

CR1

Ear2

-

-

CR1

Nr2f6

-

-

CR1

RARE

-

-

CR1

SF1

-

+

CR1

COUP-TF2

-

+

CR1

Nr2f1

+

+

CR1

COUP-TF1

+

+

CR1

Nr2f2

-

+

CR1

Nr6a1

-

-

CR1

GCNF

-

+

CR1

LRH-1

-

+

CR1

Nr5a2

-

-

CR1

Fgf

-

-

N1

LEF1

-

-

N1

Gli2

-

+

SRR1

Stat3

+

+

SRR1

Oct4

+

+

SRR1

Brn1

-

+

SRR1


Transcription factor binding sites from [5] and their availability in JASPAR [21] or Transfac [22] (commercial version) as of 2010. "-" indicates that a position specific scoring matrix is not available, "+" indicates that it is. Instead of RARE, retinoic receptor RARA and RAR-gamma are available.

Struckmann et al. BMC Evolutionary Biology 2011 11:267   doi:10.1186/1471-2148-11-267

Open Data