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Open Access Research article

Novel male-biased expression in paralogs of the aphid slimfast nutrient amino acid transporter expansion

Rebecca P Duncan1, Lubov Nathanson2 and Alex CC Wilson1*

Author Affiliations

1 Department of Biology, University of Miami, Coral Gables, FL 33146, USA

2 J.P.Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, FL 33136, USA

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BMC Evolutionary Biology 2011, 11:253  doi:10.1186/1471-2148-11-253

Published: 14 September 2011

Additional files

Additional file 1:

Summary of BLAST, mapping, and annotation results from Blast2GO. Table summarizing BLAST, mapping and annotation results from Blast2GO for sex-enriched genes identified in microarray. Table includes number of male-and female enriched genes and total number of genes that had significant BLAST hits (E < 0.001), mapped to GO terms, and were successfully annotated by Blast2GO.

Format: PDF Size: 48KB Download file

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Additional file 2:

BLAST, mapping, and annotation results for female-enriched genes in microarray. Table containing full BLAST, mapping and annotation results from Blast2GO for female-enriched genes identified in microarray. Includes data on fold-change, false discovery rate, and female morph comparisons. All female-enriched genes are listed, including those that were not successfully annotated in Blast2GO. See "Annotation" column for information on which genes were successfully annotated. GO terms are grouped by category: C = Cellular component, F = Molecular function, P = Biological process.

Format: CSV Size: 203KB Download file

Open Data

Additional file 3:

BLAST, mapping, and annotation results for male-enriched genes in microarray. Table containing full BLAST, mapping and annotation results from Blast2GO for male-enriched genes identified in microarray. Includes data on fold-change, false discovery rate, and female morph comparisons. All male-enriched genes are listed, including those that were not successfully annotated in Blast2GO. See "Annotation" column for information on which genes were successfully annotated. GO terms are grouped by category: C = Cellular component, F = Molecular function, P = Biological process.

Format: CSV Size: 185KB Download file

Open Data

Additional file 4:

Myzus persicae unigenes (contigs) and Expressed Sequence Tags (ESTs) represented on microarray and corresponding GenBank accession numbers. Left column contains M. persicae unigenes and ESTs. Unigenes (contigs) are numbered and ESTs have no contig ID (unassigned). Right column contains GenBank accession numbers corresponding to each contig and EST. Contig IDs listed multiple times are represented by multiple unique ESTs.

Format: CSV Size: 342KB Download file

Open Data

Additional file 5:

Overrepresented Gene Ontology (GO) terms among sex-enriched contigs from microarray. Results from fisher exact test for overrepresented GO terms among sex-enriched genes on the microarray. Includes GO ID, description, category (C = Cellular component, F = Molecular function, P = Biological process), sex in which the term was enriched, and details used to calculate the exact test.

Format: CSV Size: 6KB Download file

Open Data