Table 1

Bacterial phyla bearing biotin-dependent carboxylase sequences

Protein function (protein subunit)


ACC (BC)

ACC (CT-alpha)

ACC (CT-beta)

PCC (alpha)

PCC (beta)

MCC (alpha)

MCC (beta)

XCC (alpha)

XCC (beta)

PYC

UCA (BC domain)


Alphaproteobacteria (62)

+++

+++

+++

+++

+++

+++

+++

+

+

+++

+

Betaproteobacteria (27)

+++

+++

+++

+++

+++

+++

+++

+++

+++

-

+

Gammaproteobacteria (69)

+++

+++

+++

-

-

+

+

+

+

-

+

Deltaproteobacteria (16)

+++

+++

+++

-

-

-

-

+++

+++

+

-

Epsilonproteobacteria (8)

+++

+++

+++

-

-

-

-

+++

-

-

-

Acidobacteria (3)

+++

+++

+++

-

-

-

-

+++

+++

+

+

Actinobacteria (29)

+

+

+

-

-

-

+++

+++

+++

+++

+

Firmicutes (59)

+++

+++

+++

-

-

-

-

+

+

+++

-

Aquificae (4)

+++

+++

+++

-

-

-

-

+++

-

-

-

Bacteroidetes (20)

+++

+++

+++

-

-

-

-

+++

+++

+

-

Chlamydia/Verrucomicrobia (11)

+++

+++

+++

-

-

-

-

-

-

+

+

Cyanobacteria (18)

+++

+++

+++

-

-

-

-

-

-

-

-

Chloroflexi (5)

+++

+++

+++

-

-

-

+++

+++

+++

-

-

Chlorobi (6)

+++

+++

+++

-

-

-

-

+++

+++

-

-

Planctomycetes (4)

+++

+++

+++

-

-

-

-

-

-

+++

-

Deinococcus-Thermus (3)

+++

+++

+++

-

-

-

-

+

+++

-

-

Spirochaetes (3)

-

-

-

-

-

-

-

+

+

-

-

Thermotogales (5)

-

-

-

-

-

-

-

-

+++

-

-

Fusobacteria (1)*

+++

+++

+++

-

-

-

-

-

+++

-

-

Elusimicrobia (1)*

+++

-

-

-

-

-

-

-

-

-

+++

Dictyoglomi (1) *

+++

+++

+++

-

-

-

-

-

-

-

-

Nitrospira (1)*

+++

+++

+++

-

-

-

-

+++

-

-

-


Numbers next to phyla names correspond to the number of complete genome sequences upon which the search was carried out (see additional file 2 for the complete list). +++, homologues could be found in more than 50% of the genome sequences; +, homologues could be found in less than 50% of the complete genome sequences; -, no homologues found; *, only one genome sequence from these phyla was analyzed.

Lombard and Moreira BMC Evolutionary Biology 2011 11:232   doi:10.1186/1471-2148-11-232

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