Table 1

Population statistics, diversity estimates and neutrality tests based on ITS region of calochroid taxa studied

Population statistics

Tests of neutrality


Species/

population

n

s

h

hd

k

π

(SD)

θw

Tajima's

D

Fu and

Li's D*

Statistic

Fu and

Li's F*

Statistic

Fu's Fs

Statistic


C. arcuatorum

Old World

11

1

2

0.182

0.181

3.3 × 10-4

(2.6 × 10-4)

6.1 × 10-4

-1.128

(NS)

-1.289

(NS)

-1.399

(NS)

-0.410

(NS)

New World

15

36

4

0.685

12.229

0.021

0.019

1.635

(NS)

1.502**

1.502

(NS)

9.684

(NS)

Mountain USA

2

0

1

0.000

0.000

0.000

0.000

ND

ND

ND

ND

Pacific USA

10

20

2

0.356

7.111

0.013 (5.6 × 10-3)

0.013

0.027

(NS)

1.567**

1.326

(NS)

9.432

(NS)

Costa Rica

3

0

1

0.000

0.000

0.000

0.000

ND

ND

ND

ND

All

(l = 559)

26

37

5

0.698

13.741

0.024

(1.9 × 10-3)

0.017

1.569

(NS)

1.568**

1.843**

13.357

(NS)

C. aureofulvus

Old World

7

1

2

0.571

0.571

0.001

(2.1 × 10-4)

7.3 × 10-4

1.341

(NS)

0.953

(NS)

1.101

(NS)

0.856

(NS)

New World

11

2

3

0.618

0.690

1.23 × 10-3

(2.9 × 10-4)

1.22 × 10-3

0.036

(NS)

-0.033

(NS)

-0.269

(NS)

-0.113

(NS)

Mountain USA

2

0

1

0.000

0.000

0.000

0.000

ND

ND

ND

ND

Pacific USA

9

2

3

0.667

0.777

0.001

(3.2 × 10-4)

0.001

0.195

(NS)

-0.221

(NS)

-0.135

(NS)

-0.108

(NS)

All

(l = 560)

18

4

5

0.804

1.346

0.002

(3.0 × 10-4)

0.002

0.473

(NS)

0.211

(NS)

0.324

(NS)

-0.505

(NS)

C. elegantior

Old World

16

3

4

0.442

0.4833

9 × 10-4

(3.6 × 10-4)

0.002

-1.316

(NS)

-1.122

(NS)

-1.351

(NS)

-1.867

(NS)

New World

67

7

7

0.662

1.003

0.002

(2.7 × 10-4)

0.003

-0.791

(NS)

-0.420

(NS)

-0.638

(NS)

-1.614

(NS)

Mountain USA

62

4

5

0.608

0.739

0.001

(1.8 × 10-4)

0.002

-0.288

(NS)

-0.153

(NS)

-0.228

(NS)

-0.753

(NS)

Pacific

5

1

2

0.400

0.400

7.8 × 10-4

(4.6 × 10-4)

9.3 × 10-4

-0.816

(NS)

-0.816

(NS)

-0.771

(NS)

0.090

(NS)

All

(l = 516)

83

13

11

0.760

2.139

4.2 × 10-3

(4.2 × 10-4)

0.005

-0.495

(NS)

-0.782

(NS)

-0.808

(NS)

-1.468

(NS)

C. napus

Old World

8

0

1

0.000

0.000

0.000

0.000

ND

ND

ND

ND

New World

19

2

3

0.368

0.385

6.8 × 10-4

(2.5 × 10-4)

1.0 × 10-3

-0.777

-0.573

-0.720

-0.725

(NS)

Mountain USA

16

1

2

0.325

0.325

5.8 × 10-4

(2.2 × 10-4)

5.3 × 10-4

0.155

(NS)

0.688

(NS)

0.627

(NS)

0.551

(NS)

Pacific USA

3

1

2

0.667

0.666

1.1 × 10-3

(5.6 × 10-4)

0.002

ND

ND

ND

0.201

(NS)

All

(l = 564)

27

2

3

0.271

0.279

5.0 × 10-4

(2.0 × 10-4)

9.2 × 10-4

-0.977

(NS)

-0.702

(NS)

-0.898

(NS)

-1.088

(NS)


l, nucleotide sequence length; n, sample size; s, number of segregating sites; h, haplotypes; hd, haplotype diversity; k, average number of nucleotide pair wise differences; π, number of nucleotide differences per site (SD = standard deviation of π); θw, Watterson's estimate of θ per site; ND, not determined because no polymorphism was found; NS, non-significant; **, P < 0.02.

Garnica et al. BMC Evolutionary Biology 2011 11:213   doi:10.1186/1471-2148-11-213

Open Data