Table 1

Structures and predicted subcellular localization of the CRN protein family in Bd JAM 81.

JGI IDs

Domain structure

Introns

Scaffold location/gene

number in the scaffafold

ESTs

TargetP

SignalP

iPSORT



N-

C-

NN

HMM


26417

typeA

DXX DHA

1

scaffold_10/377

_

_

_

26603

typeA

DXX DHA

2

scaffold_10/377

_

_

_

_

26694

DN17

0

scaffold_10/377

_

_

_

_

90730

typeA

DXX DHA

1

scaffold_10/377

_

_

_

_

90240

typeA

DXX DHA

1

scaffold_9/369

_

_

_

_

26137

typeA

DXX DHA

6

scaffold_9/369

_

_

_

_

26152

typeA

DXX DHA

3

scaffold_9/369

_

_

_

_

26186

typeA

DXX DHA

0

scaffold_9/369

_

_

_

_

90292

DN17

1

scaffold_9/369

_

_

_

_

90343

typeB

DXX DXV

0

scaffold_9/369

6

_

_

_

_

26410

typeA

DXX DHA

5

scaffold_9/369

_

_

_

_

23764

typeA

DXX DHA

2

scaffold_4/596

1

_

_

_

_

34850

typeB

DFB

0

scaffold_4/596

10

_

_

_

_

87524

typeB

DFB

0

scaffold_4/596

12

_

_

_

_

24811

typeA

DXX DHA

2

scaffold_6/516

_

_

_

_

88508

typeA

DXX DHA

0

scaffold_6/516

2

_

_

_

_

25057

typeB

DX8

0

scaffold_6/516

3

_

_

_

_

84882

typeA

DXX DHA

0

scaffold_1/1593

1

_

_

_

_

84908

typeA

DXX DHA

0

scaffold_1/1593

_

_

_

_

34275

typeA

DXX DHA

3

scaffold_1/1593

2

_

_

_

_

22414

typeA

DXX DAB

1

scaffold_1/1593

_

_

_

_

85109

typeA

DXX DHA

0

scaffold_1/1593

1

_

_

_

_

22610

typeA

DXX DHA

6

scaffold_1/1593

1

_

_

_

_

22615

typeA

DXX DHA

1

scaffold_2/629

_

_

_

_

86546

typeB

DFA DDC

0

scaffold_2/629

1

_

_

_

_

86517

DN17

1

scaffold_2/629

_

_

_

_

36642

DBE

0

scaffold_2/629

2

_

S

S

_

23071

typeB

DX8

4

scaffold_2/629

4

_

_

_

_

23077

typeB

DX8

3

scaffold_2/629

3

_

_

_

_

23173

typeA

DXX DAB

3

scaffold_2/629

1

_

_

_

_

23206

typeA

DXX DHA

4

scaffold_3/601

_

_

_

_

23217

DN17

1

scaffold_3/601

_

_

_

_

87221

typeB

DX8

0

scaffold_3/601

2

_

S

_

_

87128

DN17

0

scaffold_3/601

_

_

_

_

23760

typeA

DXX DHA

1

scaffold_3/601

1

_

_

_

_

25252

typeA

DXX DHA

5

scaffold_7/438

_

_

_

_

25352

typeB

DXX DXV

0

scaffold_7/438

2

_

_

_

_

35207

DX8

1

scaffold_7/438

3

_

_

_

_

37012

typeB

DFB

0

scaffold_7/438

10

_

_

_

_

25664

typeA

DXX DXV

1

scaffold_7/438

_

_

_

_

91252

typeA

DXX DHA

1

scaffold_12/268

_

_

_

_

91239

DFB

1

scaffold_12/268

8

_

_

_

_

91238

typeA

DXX DHA

1

scaffold_12/268

1

_

_

_

_

27205

typeA

DXX DHA

2

scaffold_12/268

_

_

_

_

35892

typeB

DFA DDC

0

scaffold_12/268

6

_

_

_

_

91331

typeA

DXX DHA

1

scaffold_12/268

_

_

_

_

89833

DFB

0

scaffold_8/465

8

_

_

_

_

89826

typeA

DXX DHA

1

scaffold_8/465

_

_

_

_

24299

typeA

DXX DHA

3

scaffold_5/527

_

_

_

_

24333

typeB

DFB

0

scaffold_5/527

14

_

_

_

_

24341

typeA

DXX DAB

2

scaffold_5/527

_

_

_

_

36889

typeB

DFB

0

scaffold_5/527

12

_

_

_

_

87953

typeB

DFB

0

scaffold_5/527

13

_

S

_

_

87954

typeB

DFB

0

scaffold_5/527

14

_

S

_

_

88475

typeA

DXX DHA

0

scaffold_5/527

_

_

_

_

24764

typeB

DFA DDC

0

scaffold_5/527

2

_

_

_

_

88482

typeA

DXX DHA

2

scaffold_5/527

1

_

_

_

_

27291

typeA

DXX DHA

3

scaffold_13/279

_

_

_

_

37407

typeB

DFB

0

scaffold_13/279

14

_

_

_

_

27710

typeA

DXX DHA

1

scaffold_14/258

1

_

_

_

_

27719

typeA

DXX DHA

0

scaffold_14/258

_

_

_

_

36061

typeB

DX8

0

scaffold_14/258

6

_

_

_

_

28349

typeA

DXX DXV

1

scaffold_18/194

_

_

_

_

28355

typeA

DXX DHA

0

scaffold_18/194

M

_

_

_

92602

typeA

DXX DHA

0

scaffold_18/194

_

_

_

_

28463

typeA

DXX DHA

4

scaffold_18/194

_

_

_

_

28466

typeA

DXX DXV

1

scaffold_18/194

1

_

_

_

_

92692

typeB

DFA DDC

1

scaffold_18/194

3

_

_

_

_

28183

typeA

DXX DHA

4

scaffold_17/196

_

_

_

_

28329

typeA

DXX DHA

3

scaffold_17/196

_

_

_

_

28345

typeA

DXX DHA

1

scaffold_17/196

_

_

_

_

28523

DXX DHA

2

scaffold_19/95

S

S

_

_

28594

DN17

3

scaffold_19/95

1

_

_

_

_

28683

typeA

DXX DHA

3

scaffold_20/92

_

_

_

_

28687

typeA

DXX DHA

3

scaffold_20/92

_

_

_

_

26749

typeA

DXX DHA

4

scaffold_11/338

S

S

_

_

90966

DX8

0

scaffold_11/338

1

_

S

_

_

26764

typeA

DXX DAB

3

scaffold_11/338

_

_

_

_

26962

typeB

DX8

0

scaffold_11/338

7

_

S

_

_

26980

typeB

DX8

0

scaffold_11/338

6

_

S

_

_

91063

typeA

DXX DHA

1

scaffold_11/338

1

_

_

_

_

92027

typeA

DXX DHA

1

scaffold_15/227

_

_

_

_

27784

typeA

DXX DAB

2

scaffold_15/227

_

_

_

_

92094

typeA

DXX DHA

1

scaffold_15/227

_

_

_

_


"Type A" and "Type B" show two different types of conserved N-terminal domains of Bd CRN proteins, whose detailed information is shown in Additional file 5. "M" and "S" show that the protein is likely localized in mitochondria and the secretory pathway, respectively.

Sun et al. BMC Evolutionary Biology 2011 11:195   doi:10.1186/1471-2148-11-195

Open Data