Table 3

Best-fitting model of sequence evolution for each locus

Locus

Model

-lnL

AIC

α

I


LOC_Os01g01790

TrN + Γ + I

3,812.85

7,747.70

0.527

0.470

LOC_Os01g09300

K80 + Γ

3,202.24

6,520.48

0.342

-

LOC_Os01g11070

HKY + Γ

4,079.53

8,295.06

0.380

-

LOC_Os01g13200

HKY + Γ

2,884.00

5,900.00

0.270

-

LOC_Os01g19470

HKY + Γ

3,442.45

7,008.90

0.687

-

LOC_Os01g21160

TrN + Γ

5,012.34

10,136.68

0.475

-

LOC_Os01g24680

TrN + Γ + I

3,650.18

7,428.36

0.805

0.435

LOC_Os01g37560

HKY + Γ

3,696.29

7,486.58

0.392

-

LOC_Os01g39310

K80 + Γ

3,293.51

6,693.03

0.328

-

LOC_Os01g48720

HKY + Γ

4,172.17

8,478.34

0.805

-

LOC_Os01g53720

HKY + Γ

4,102.88

8,329.77

0.521

-

LOC_Os01g55530

K80 + Γ

4,250.90

8,635.80

0.426

-

LOC_Os01g56630

HKY + Γ

3,285.91

6,715.82

0.504

-

LOC_Os01g60230

HKY + Γ

3,514.88

7,111.76

0.355

-

LOC_Os01g61720

TrN + Γ

3,730.58

7,565.15

0.385

-

LOC_Os01g62900

TrN + Γ

3,344.32

6,830.64

0.241

-

LOC_Os01g67220

TrN + Γ

4,205.56

8,529.13

0.414

-

LOC_Os01g68770

TrN + Γ + I

4,137.81

8,397.62

0.631

0.462

LOC_Os01g70670

K80 + Γ

3,362.32

6,846.63

0.404

-

LOC_Os01g72220

K80 + Γ

3,721.70

7,559.39

0.253

-

LOC_Os01g73790

TrNef + Γ + I

2,953.10

6,028.21

0.689

0.617

eIFiso4E

TrN + Γ + I

1,592.24

3,300.49

1.004

0.666

CRTISO

TVM + Γ + I

1,515.13

3,162.26

0.807

0.621

PinA

K80 + Γ

1,345.73

2,779.45

0.243

-

PinB

GTR + Γ

1,460.81

2,993.62

0.264

-

PSY2

K80 + Γ + I

1,210.07

2,530.14

0.648

0.596

MATK

TVM + Γ

4,255.67

8,659.34

0.373

-

Supermatrix

GTR + I + Γ

63,591.59

127,037.19

0.799

0.580


Γ: gamma distribution; I: proportion of invariable sites; lnL = log-likelihood; AIC: Akaike Information Criterion; α: shape parameter of the gamma distribution.

Escobar et al. BMC Evolutionary Biology 2011 11:181   doi:10.1186/1471-2148-11-181

Open Data