Open Access Highly Accessed Research article

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

Juan S Escobar125*, Céline Scornavacca236, Alberto Cenci147, Claire Guilhaumon4, Sylvain Santoni4, Emmanuel JP Douzery2, Vincent Ranwez2, Sylvain Glémin2 and Jacques David4

Author Affiliations

1 Institut National de la Recherche Agronomique, Centre de Montpellier, UMR Diversité et Adaptation des Plantes Cultivées, Domaine de Melgueil, 34130 Mauguio, France

2 Institut des Sciences de l'Evolution, UMR 5554 CNRS, Université Montpellier II, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France

3 Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier, UMR 5506, Université Montpellier II, 161 rue Ada, 34392 Montpellier Cedex 5, France

4 Montpellier Supagro, Centre International d'Etudes Supérieures en Sciences Agronomiques, UMR Diversité et Adaptation des Plantes Cultivées, 2 Place Pierre Viala, 34060 Montpellier Cedex 1, France

5 Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, M5S 3B2 Toronto, Canada

6 University of Tübingen, Faculty of Computer Science, Chair of Algorithms in Bioinformatics, Sand 14, 72076 Tübingen, Germany

7 Institut de Recherche pour le Développement, UMR RPB-Equipe DIVA, 911 Avenue Agropolis, 34394 Montpellier Cedex 5, France

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BMC Evolutionary Biology 2011, 11:181  doi:10.1186/1471-2148-11-181

Published: 24 June 2011

Additional files

Additional file 1:

Primers used in the PCR amplification of each locus. Table S1 with the sequence of each primer used during PCR amplification.

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Additional file 2:

Phylogenetic tree inferred with LOC_Os01g01790 sequences. Figure S1 showing the phylogenetic tree inferred with locus LOC_Os01g01790.

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Additional file 3:

Phylogenetic tree inferred with LOC_Os01g09300sequences. Figure S2 showing the phylogenetic tree inferred with locus LOC_Os01g09300.

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Additional file 4:

Phylogenetic tree inferred with LOC_Os01g11070 sequences. Figure S3 showing the phylogenetic tree inferred with locus LOC_Os01g11070.

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Open Data

Additional file 5:

Phylogenetic tree inferred with LOC_Os01g13200 sequences. Figure S4 showing the phylogenetic tree inferred with locus LOC_Os01g13200.

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Open Data

Additional file 6:

Phylogenetic tree inferred with LOC_Os01g19470 sequences. Figure S5 showing the phylogenetic tree inferred with locus LOC_Os01g19470.

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Open Data

Additional file 7:

Phylogenetic tree inferred with LOC_Os01g21160 sequences. Figure S6 showing the phylogenetic tree inferred with locus LOC_Os01g21160.

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Open Data

Additional file 8:

Phylogenetic tree inferred with LOC_Os01g24680 sequences. Figure S7 showing the phylogenetic tree inferred with locus LOC_Os01g24680.

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Open Data

Additional file 9:

Phylogenetic tree inferred with LOC_Os01g37560 sequences. Figure S8 showing the phylogenetic tree inferred with locus LOC_Os01g37560.

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Open Data

Additional file 10:

Phylogenetic tree inferred with LOC_Os01g39310 sequences. Figure S9 showing the phylogenetic tree inferred with locus LOC_Os01g39310.

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Open Data

Additional file 11:

Phylogenetic tree inferred with LOC_Os01g48720 sequences. Figure S10 showing the phylogenetic tree inferred with locus LOC_Os01g48720.

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Open Data

Additional file 12:

Phylogenetic tree inferred with LOC_Os01g53720 sequences. Figure S11 showing the phylogenetic tree inferred with locus LOC_Os01g53720.

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Open Data

Additional file 13:

Phylogenetic tree inferred with LOC_Os01g55530 sequences. Figure S12 showing the phylogenetic tree inferred with locus LOC_Os01g55530.

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Open Data

Additional file 14:

Phylogenetic tree inferred with LOC_Os01g56630 sequences. Figure S13 showing the phylogenetic tree inferred with locus LOC_Os01g56630.

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Open Data

Additional file 15:

Phylogenetic tree inferred with LOC_Os01g60230 sequences. Figure S14 showing the phylogenetic tree inferred with locus LOC_Os01g60230.

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Open Data

Additional file 16:

Phylogenetic tree inferred with LOC_Os01g61720 sequences. Figure S15 showing the phylogenetic tree inferred with locus LOC_Os01g61720.

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Open Data

Additional file 17:

Phylogenetic tree inferred with LOC_Os01g62900 sequences. Figure S16 showing the phylogenetic tree inferred with locus LOC_Os01g62900.

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Open Data

Additional file 18:

Phylogenetic tree inferred with LOC_Os01g67220 sequences. Figure S17 showing the phylogenetic tree inferred with locus LOC_Os01g67220.

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Open Data

Additional file 19:

Phylogenetic tree inferred with LOC_Os01g68770 sequences. Figure S18 showing the phylogenetic tree inferred with locus LOC_Os01g68770.

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Open Data

Additional file 20:

Phylogenetic tree inferred with LOC_Os01g70670 sequences. Figure S19 showing the phylogenetic tree inferred with locus LOC_Os01g70670.

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Open Data

Additional file 21:

Phylogenetic tree inferred with LOC_Os01g72220 sequences. Figure S20 showing the phylogenetic tree inferred with locus LOC_Os01g72220.

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Open Data

Additional file 22:

Phylogenetic tree inferred with LOC_Os01g73790 sequences. Figure S21 showing the phylogenetic tree inferred with locus LOC_Os01g73790.

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Open Data

Additional file 23:

Phylogenetic tree inferred with eIFiso4E sequences. Figure S22 showing the phylogenetic tree inferred with locus eIFiso4E.

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Additional file 24:

Phylogenetic tree inferred with CRTISO sequences. Figure S23 showing the phylogenetic tree inferred with locus CRTISO.

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Additional file 25:

Phylogenetic tree inferred with PinA sequences. Figure S24 showing the phylogenetic tree inferred with locus PinA.

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Open Data

Additional file 26:

Phylogenetic tree inferred with PinB sequences. Figure S25 showing the phylogenetic tree inferred with locus PinB.

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Additional file 27:

Phylogenetic tree inferred with PSY2 sequences. Figure S26 showing the phylogenetic tree inferred with locus PSY2.

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Additional file 28:

Phylogenetic tree inferred with MATK sequences. Figure S27 showing the phylogenetic tree inferred with locus MATK.

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Open Data