Table 2 |
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|
Comparison of log-likelihood differences between alternative topologies and results of KH and AU tests |
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|
No |
Alternative topologies |
Reference |
Difference of log-likelihood value from ML tree and rejection of KH and AU tests |
||
|
|
|||||
|
ΔlnL |
KH |
AU |
|||
|
|
|||||
|
1 |
Topology of the ML tree from Aln-1 (-lnL = 77832.21) |
This study (= Fig. 1) |
0.00 |
- |
- |
|
Phrynomerinae (African taxon) |
|||||
|
2 |
2 nd basal position of Phrynomerinae (Kalophryninae is most basal) |
[1] |
23.44 |
+ |
+ |
|
3 |
Most basal of Phrynomerinae + Gastrophryninae clade |
[3] |
8.11 |
- |
- |
|
Hoplophryninae (African taxon) |
|||||
|
4 |
Hoplophryninae + (Cophylinae + Scaphiophryninae) clade |
[3] |
4.80 |
- |
- |
|
5 |
Hoplophryninae + Cophylinae clade |
[1] |
7.88 |
- |
- |
|
6 |
Hoplophryninae + Asterophryinae clade |
[3] |
36.61 |
++ |
++ |
|
Cophylinae and Scaphiophryne (Madagascan taxa) |
|||||
|
7 |
3 rd basal position of Scaphiophryninae & Cophylinae + Kalophryninae clade |
[2] |
19.72 |
+ |
+ |
|
8 |
Scaphiophryninae + Microhylinae clade & Cophylinae + Hoplophryninae clade |
[1] |
87.37 |
++ |
++ |
|
Gastrophryninae (American taxon) |
|||||
|
9 |
4 th basal position of Gastrophryninae |
[2] |
19.72 |
+ |
+ |
|
10 |
Gastrophryninae + (Cophylinae + Hoplophryninae) clade |
[1] |
87.37 |
++ |
++ |
|
11 |
2 nd basal position of Gastrophryninae |
[3] |
4.43 |
- |
- |
|
Kalophryninae (Asian taxon) |
|||||
|
12 |
Most basal of Kalophryninae |
[1] |
23.44 |
+ |
+ |
|
13 |
Kalophryninae + Cophylinae clade |
[2] |
19.72 |
+ |
+ |
|
14 |
Kalophryninae+(Cophylinae + Scaphiophryninae) clade |
[3] |
15.79 |
- |
- |
|
Asterophryinae, Dyscophinae, & Microhylinae (Australian-New Guinean, Madagascan, Asian taxa) |
|||||
|
15 |
Asterophryinae + Dyscophinae clade & Microhylidae + Scaphiophryninae clade |
[1] |
80.83 |
++ |
++ |
|
16 |
Microhylidae + Dyscophinae clade & (Asterophryinae + Kalophryninae) + Hoplophryninae clade |
[3] |
44.43 |
++ |
++ |
|
Gastrophrynoides |
|||||
|
17 |
Gastrophrynoides + (Asterophryinae + (Dyscophinae + Microhylinae)) |
This study* |
168.78 |
++ |
++ |
|
|
|||||
|
ML and lnL refer maximum likelihood and log-likelihood value. ΔlnL indicates difference of log-likelihood value from that of the ML topology. For KH and AU tests, P > 0.05, < 0.05, and < 0.01 are shown by -, +, ++, respectively. *The Maximum likelihood tree under the constraint of "Gastrophrynoides is not monophyly with Asterophryinae". |
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|
Kurabayashi et al. BMC Evolutionary Biology 2011 11:175 doi:10.1186/1471-2148-11-175 |
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