Table 1 |
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atpB dataset: estimates per codon position for the nucleotide frequencies, among-site rate variation distribution and relative rates (for the GTR123+Γ123+CP123+F123+FF16+3F model). |
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|
Frequencies |
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|
|
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|
CP |
A |
C |
G |
T |
|
CP123 |
|
|
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|
1 |
0.2396 [0.21; 0.28] |
0.2216 [0.19; 0.26] |
0.3717 [0.33; 0.42] |
0.1671 [0.14; 0.20] |
0.1579 [0.11; 0.24] |
0.1066 [0.08; 0.14] |
|
2 |
0.2804 [0.24; 0.33] |
0.2298 [0.19; 0.27] |
0.1656 [0.13; 0.20] |
0.3242 [0.28; 0.38] |
0.0946 [0.01; 0.15] |
0.0512 [0.04; 0.07] |
|
3 |
0.3784 [0.35; 0.41] |
0.0875 [0.08; 0.10] |
0.0707 [0.06; 0.08] |
0.4634 [0.43; 0.50] |
0.8716 [0.73; 1.04] |
2.8422 [2.80; 2.88] |
|
|
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|
Shown are mean estimates of 100.000 MCMC iterations, discarding the first 20.000 iterations as the burn-in, and the corresponding 95% credibility intervals. The values in the table clearly illustrate the different substitution dynamics at the three codon positions. |
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|
Baele et al. BMC Evolutionary Biology 2011 11:145 doi:10.1186/1471-2148-11-145 |
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