Table 2

Ribosomal proteins used as markers of ribosomal evolution in the urancestor

SCOP ID

FSF

r-proteins

SCOP fold superfamily

min_set

max_set


50249

b.40.4

S12, S17

Nucleic acid-binding proteins

+

+

54211

d.14.1

S9

Ribosomal protein S5 domain 2-like

+

+

50447

b.43.3

L3

Translation proteins

+

+

50104

b.34.5

L2, L24

Translation proteins SH3-like domain

+

+

55174

d.66.1

S4

Alpha-L RNA-binding motif

-

+

46946

a.156.1

S13

S13-like H2TH domain

-

+

56053

d.141.1

L6

Ribosomal protein L6

-

+

57716

g.39.1

S14

Glucocorticoid receptor-like (DNA-binding domain)

-

+

53137

c.55.4

L18, S11

Translational machinery components

-

+

54768

d.50.1

S5

dsRNA-binding domain-like

-

+

48300

a.108.1

L7, L12

Ribosomal protein L7/12, oligomerisation (N-terminal) domain

-

+


Kim and Caetano-Anoll├ęs BMC Evolutionary Biology 2011 11:140   doi:10.1186/1471-2148-11-140

Open Data