Table 1 |
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Summary of 28 LAB taxa and one outgroup (Bacillus subtilis) |
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Species-Organisms |
Association |
NCBI RefSeq |
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Bacillus subtilis subsp. subtilis str. 168 |
Outgroup |
NC_000964 |
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Enterococcus faecalis V583 |
gastrointestinal tract bacteria |
NC_004668 |
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Lactobacillus acidophilus NCFM |
gastrointestinal tract bacteria |
NC_006814 |
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Lactobacillus brevis ATCC 367 |
other fermentation such as beer, wine, plants, or meat |
NC_008497 |
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Lactobacillus casei ATCC 334 |
dairy fermentation |
NC_008526 |
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Lactobacillus casei BL23 |
dairy fermentation |
NC_010999 |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 |
dairy fermentation |
NC_008054 |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 |
dairy fermentation |
NC_008529 |
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Lactobacillus fermentum IFO 3956 |
other fermentation such as beer, wine, plants, or meat |
NC_010610 |
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Lactobacillus gasseri ATCC 33323 |
gastrointestinal tract bacteria |
NC_008530 |
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Lactobacillus helveticus DPC 4571 |
dairy fermentation (Swiss cheese isolate) |
NC_010080 |
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Lactobacillus johnsonii NCC 533 |
gastrointestinal tract bacteria |
NC_005362 |
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Lactobacillus plantarum WCFS1 |
Human saliva (first), gut, dairy, wine, plants, or meat |
NC_004567 |
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Lactobacillus reuteri F275 |
gastrointestinal tract bacteria |
NC_009513 |
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Lactobacillus reuteri JCM 1112 |
gastrointestinal tract bacteria |
NC_010609 |
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Lactobacillus sakei subsp. sakei 23K |
other fermentation such as beer, wine, plants, or meat |
NC_007576 |
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Lactobacillus salivarius UCC118 |
gastrointestinal tract bacteria |
NC_007929 |
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Lactococcus lactis subsp. cremoris MG1363 |
dairy fermentation |
NC_009004 |
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Lactococcus lactis subsp. cremoris SK11 |
dairy fermentation |
NC_008527 |
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Lactococcus lactis subsp. lactis Il1403 |
dairy fermentation |
NC_002662 |
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Leuconostoc citreum KM20 |
other fermentation such as beer, wine, plants, or meat |
NC_010471 |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 |
other fermentation such as beer, wine, plants, or meat |
NC_008531 |
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Oenococcus oeni PSU-1 |
other fermentation such as beer, wine, plants, or meat |
NC_008528 |
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Pediococcus pentosaceus ATCC 25745 |
dairy fermentation |
NC_008525 |
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Streptococcus gordonii str. Challis substr. CH1 |
human oral flora (dental plaque) |
NC_009785 |
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Streptococcus mutans UA159 |
oral streptococci (leading cause of dental caries) |
NC_004350 |
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Streptococcus thermophilus CNRZ1066 |
dairy fermentation |
NC_006449 |
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Streptococcus thermophilus LMD-9 |
dairy fermentation |
NC_008532 |
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Zhang et al. BMC Evolutionary Biology 2011 11:1 doi:10.1186/1471-2148-11-1 |
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