Table 1

Summary of 28 LAB taxa and one outgroup (Bacillus subtilis)

Species-Organisms

Association

NCBI RefSeq


Bacillus subtilis subsp. subtilis str. 168

Outgroup

NC_000964

Enterococcus faecalis V583

gastrointestinal tract bacteria

NC_004668

Lactobacillus acidophilus NCFM

gastrointestinal tract bacteria

NC_006814

Lactobacillus brevis ATCC 367

other fermentation such as beer, wine, plants, or meat

NC_008497

Lactobacillus casei ATCC 334

dairy fermentation

NC_008526

Lactobacillus casei BL23

dairy fermentation

NC_010999

Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842

dairy fermentation

NC_008054

Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

dairy fermentation

NC_008529

Lactobacillus fermentum IFO 3956

other fermentation such as beer, wine, plants, or meat

NC_010610

Lactobacillus gasseri ATCC 33323

gastrointestinal tract bacteria

NC_008530

Lactobacillus helveticus DPC 4571

dairy fermentation (Swiss cheese isolate)

NC_010080

Lactobacillus johnsonii NCC 533

gastrointestinal tract bacteria

NC_005362

Lactobacillus plantarum WCFS1

Human saliva (first), gut, dairy, wine, plants, or meat

NC_004567

Lactobacillus reuteri F275

gastrointestinal tract bacteria

NC_009513

Lactobacillus reuteri JCM 1112

gastrointestinal tract bacteria

NC_010609

Lactobacillus sakei subsp. sakei 23K

other fermentation such as beer, wine, plants, or meat

NC_007576

Lactobacillus salivarius UCC118

gastrointestinal tract bacteria

NC_007929

Lactococcus lactis subsp. cremoris MG1363

dairy fermentation

NC_009004

Lactococcus lactis subsp. cremoris SK11

dairy fermentation

NC_008527

Lactococcus lactis subsp. lactis Il1403

dairy fermentation

NC_002662

Leuconostoc citreum KM20

other fermentation such as beer, wine, plants, or meat

NC_010471

Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

other fermentation such as beer, wine, plants, or meat

NC_008531

Oenococcus oeni PSU-1

other fermentation such as beer, wine, plants, or meat

NC_008528

Pediococcus pentosaceus ATCC 25745

dairy fermentation

NC_008525

Streptococcus gordonii str. Challis substr. CH1

human oral flora (dental plaque)

NC_009785

Streptococcus mutans UA159

oral streptococci (leading cause of dental caries)

NC_004350

Streptococcus thermophilus CNRZ1066

dairy fermentation

NC_006449

Streptococcus thermophilus LMD-9

dairy fermentation

NC_008532


Zhang et al. BMC Evolutionary Biology 2011 11:1   doi:10.1186/1471-2148-11-1

Open Data