Table 3

Taxa used and sequences collected in testing the 12 EPIC markers.

Species and higher classifications

Locus


1777E4

4174E20

8680E2

8680E3

14867E1

19231E4

25073E1

36298E1

40245E5

55305E1

55378E1

59107E2


Clupeiformes

Thryssa hamiltonii

HM012491

HM012502

HM012498

HM012537

HM012550

HM012545

HM012506

HM012530

Cypriniformes

Danio rerio

HM012515

HM012492

HM012503

HM012499

HM012538

HM012551

HM012546

HM012565

HM012507

HM012531

HM012523

HM012558

Hypophthalmichthys molitrix

HM012512

HM012488

HM012495

HM012534

HM012547

HM012542

HM012562

HM012527

HM012520

HM012555

Hypophthalmichthys nobilis

HM012513

HM012489

HM012496

HM012535

HM012548

HM012543

HM012563

HM012528

HM012521

HM012556

Tetraodontiformes

Takifugu rubripes

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Tetraodon nigroviridis

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Gasterosteiformes

Gasterosteus aculeatus

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Beloniformes

Oryzias latipes

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Ensembl

Perciformes

Larimichthys crocea

HM012514

HM012490

HM012501

HM012497

HM012536

HM012549

HM012544

HM012564

HM012505

HM012529

HM012522

HM012557

Siniperca chuatsi

HM012511

HM012487

HM012493

HM012533

HM012541

HM012561

HM012504

HM012526

HM012519

Odontobutis potamophila

HM012508

HM012484

HM012532

HM012539

HM012559

HM012524

HM012516

HM012552

Micropercops swinhonis

HM012509

HM012485

HM012494

HM012540

HM012560

HM012525

HM012517

HM012553

Rhinogobius giurinus

HM012510

HM012486

HM012500

HM012518

HM012554


Number of taxa amplified

8

9

4

7

7

5

8

7

4

8

8

7

Success rate

0.89

1.00

0.44

0.78

0.78

0.56

0.89

0.78

0.44

0.89

0.89

0.78


The sequences collected in this study are lodged in GenBank with accession numbers from HM012484 to HM012565. Ensembl means the sequence was retrieved from Ensembl database.

Li et al. BMC Evolutionary Biology 2010 10:90   doi:10.1186/1471-2148-10-90

Open Data