Additional file 2.
BLASTx hits to the Arabidopsis, Populus. Vitis and Oryza conserved single copy nuclear genes for all plants in TIGR Plant Transcript Assemblies that have more than 5 hits to the APVO single copy PlantTribes, showing taxonomic grouping as well as gene counts. Plants in the Plant Transcript Assemblies are referred by their 5 letter abbreviation which is based on the first 3 letters of the genus name, followed by the first 2 letters of the species name. A full listing of the contents of the Plant Transcript Assemblies can be seen at http://plantta.jcvi.org/cgi-bin/plantta_release.pl webcite.
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Duarte et al. BMC Evolutionary Biology 2010 10:61 doi:10.1186/1471-2148-10-61