Table 1

List of plastomes analyzed in this study.

Taxon

GenBank Accession

Plastome size (bp), G/C (%), ENc

Citation


Angiosperms:

Arabidopsis thaliana

NC_000932

154478, 40.3, 47.90

Sato et al. 1999 [68]

Morus indica

NC_008359

158484, 40.5, 47.96

Ravi et al. 2007 [69]

Vitis vinifera

NC_007957

160928, 41.0, 48.64

Jansen et al. 2006 [70]

Nicotiana tabacum

NC_001879

155943, 41.0, 48.79

Shinozaki et al. 1986 [9]

Helianthus annuus

NC_007977

151104, 40.8, 48.56

Timme et al. 2007 [71]

Spinacia oleracea

NC_002202

150725, 40.7, 48.25

Schmitz-Linneweber et al. 2001 [72]

Ranunculus macranthus

NC_008796

155129, 41.4, 49.68

Raubeson et al. 2007 [23]

Agrostis stolonifera

NC_008591

136584, 41.2, 49.76

Saski et al. 2007 [73]

Lemna minor

NC_010109

165955, 40.1, 46.69

Mardanov et al. 2008 [74]

Phalaenopsis aphrodite

NC_007499

148964, 40.4, 47.83

Chang et al. 2006 [75]

Dioscorea elephantipes

NC_009601

152609, 40.5, 47.73

Hansen et al. 2007 [21]

Acorus calamus

NC_007407

153821, 41.7, 49.76

Goremykin et al. 2005 [43]

Drimys granadensis

NC_008456

160604, 41.6, 49.82

Cai et al. 2006 [76]

Liriodendron tulipifera

NC_008326

159886, 41.8, 49.67

Cai et al. 2006 [76]

Illicium oligandrum

NC_009600

148553, 42.1, 50.37

Hansen et al. 2007 [21]

Chloranthus spicatus

NC_009598

157772, 41.6, 49.65

Hansen et al. 2007 [21]

Nymphaea alba

NC_006050

159930, 42.2, 50.68

Goremykin et al. 2004 [77]

Amborella trichopoda

NC_005086

162686, 41.7, 49.66

Goremykin et al. 2003 [78]

Gymnosperms:

Pinus thunbergii

NC_001631

119707, 41.4, 48.98

Wakasugi et al. 1994 [79]

Ephedra equisetina

NC_011954

109518, 37.5, 44.35

Wu et al. 2009 [19]

Gnetum parvifolium

NC_011942

114914, 40.2, 53.80

Wu et al. 2009 [19]

Welwitschia mirabilis

NC_010654

119726, 38.5, 45.79

Wu et al. 2009 [19]

Cycas taitungensis

NC_009618

163403, 41.7, 48.58

Wu et al. 2007 [20]

Ginkgo biloba

various

N. A., 41.8, 48.87

Leebens-Mack et al. 2005 [80]

Monilophytes:

Adiantum capillus-veneris

NC_004766

150568, 44.2, 55.12

Wolf et al. 2003 [37]

Alsophila spinulosa

NC_012818

156661, 43.6, 52.99

Gao et al. 2009 [38]

Angiopteris evecta

NC_008829

153901, 39.2, 44.32

Roper et al. 2007 [27]

Psilotum nudum

NC_003386

138829, 39.3, 45.80

GenBank direct submission

Equisetum arvense

GU191334

133309, 37.2, 41.94

This study

Lycophytes:

Selaginella uncinata

AB197035

144170, 54.3, 58.30

Tsuji et al. 2007 [35]

Selaginella moellendorffii

FJ755183

143780, 51.2, 57.73

GenBank direct submission

Isoetes flaccida

GU191333

145303, 41.9, 48.84

This study

Huperzia lucidula

NC_006861

154373, 40.3, 46.66

Wolf et al. 2005 [39]

Bryophytes:

Anthoceros formosae

NC_004543

161162, 38.2, 42.21

Kugita et al. 2003 [30]

Syntrichia ruralis

FJ546412

122630, 34.5, 35.46

Oliver et al. (in press) [32]

Physcomitrella patens

NC_005087

122890, 35.1, 36.12

Sugiura et al. 2003 [33]

Marchantia polymorpha

NC_001319

121024, 34.0, 35.25

Ohyama et al. 1986 [8]

Charophyte Algae:

Staurastrum punctulatum

NC_008116

157089, 37.1, 38.28

Turmel et al. 2005 [81]

Zygnema circumcarinatum

NC_008117

165372, 39.2, 42.45

Turmel et al. 2005 [81]

Chaetosphaeridium globosum

NC_004115

131183, 35.0, 36.95

Turmel et al. 2002 [82]

Chara vulgaris

NC_008097

184933, 35.7, 39.57

Turmel et al. 2006 [83]

Chlorokybus atmophyticus

NC_008822

152254, 39.1, 43.85

Lemieux et al. 2007 [15]

Mesostigma viride

NC_002186

118360, 34.9, 34.83

Lemieux et al. 2000 [84]


GenBank accession numbers, plastome sizes in base pairs (bp), percent G/C content, effective number of codons (ENc) and original citations are shown.

Karol et al. BMC Evolutionary Biology 2010 10:321   doi:10.1186/1471-2148-10-321

Open Data